Welcome to the
Protein Sequence and
Modular Motif Structure site.
provided by DanPatGenomics
We have the knowledge and the tools to take the mystery out of your sequence data.

We have formatted sequence information from some of the largest and most important protein motif families known, and present it for the free use of our friends, clients, and customers. All we ask is that you let us know how we can make this information more useful. We welcome your comments, questions, requests and suggestions.

 

Sequence Alignments of the Major Protein Motif Families

EGF-like motifs Sushi (complement) domains Sushi-like Selectin motifs
Laminin-like motifs Immunoglobulin Hc domains Immunoglobulin Hv domains
Fibronectin type III motifs Integrin motifs alpha/beta Apoptosis-related motifs
EF-Hand Ca++ binding motifs RNA/DNA-binding proteins Ankyrin proteins
Insulin/Somatomedins Bioactive peptides Kalikrein/vonWillibrandts
Link domains Immunodeficiency Virus envelope glycoprotein Scorpion toxin
EGF-related DANCE motifs Trysin-inhibitor-like (TIL) motifs Miscellaneous proteins

 

Modular Protein Super-structures

coagulation modulators coagulation proteases complement receptors development & adhesion
tissue matrix adhesion receptors Laminin

EGF-like Motif Structures

EGF-like Growth Factors mouse EGF human TGF-alpha human Heregulin-alpha
human Heparin-binding EGF human Betacellulin-2 human Epiregulin

Blood and Tissue Proteases human Coagulation
Factor VIIa		 Pig Coagulation
Factor IXa		 human Coagulation
Factor Xa
human tissue Plasminogen
Activator (tPA)		 human Urokinase human Thrombomodulin rat Mannose-associated
Serine Protease (MASP)

Immune System Components human Complement factor C1r human Complement factor C1s
human E-Selectin human P-Selectin

Extracellular Matrix human Fibrillin mouse Nidogen

Miscellaneous Proteins human LDL receptor Sheep Cyclooxygenase

 

Complement-like "Sushi" Motif Structures

human Beta-2-Glycoprotein (ApoH) human Membrane Cofactor
Protein (CD46)		 Vaccinia Virus Complement
Control Protein
human Complement Factor H Motif comparison

 

Laminin Motif Structures

Laminin gamma-III

 

Fibronectin type-III (FnIII) Motif Structures

Fibronectin type III
Motif Structures		 Human Fibronectin (FnIII 7-10) Integrin beta-4 (cytoplasmic)
Muscle Titin Protein Drosophila Neuroglian B.circulans-Chitinase A1
Rat Prolactin Receptor Human Fibronectin module-1 Rat Tenascin-R modules 3-5
Chick Tenascin modules 5&6

Other Prominent
Motif Structures		 Fibronectin Type-II Link Domain
EF-Hand (Ca++-binding) Insulin-like motifs alpha-Integrin
propeller domain

Glycine-rich
Model Peptide		 Alternate repeat structures Keratins
Prion Protein PrP
Tail repeat domain		 RNA/ssDNA binding proteins

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