Uoodo City

As the first episode of the series opens, a quartet of Gilgamesh officers oversee an illegal operation. Under the command of General Albert Killy and his staff, a platoon of Armored Troopers attack Lido, an asteroid base belonging to the Melkian army, an ally of the Gilgamesh. Newly assigned to this operation, but unaware of its true purpose, is special forces AT pilot Chirico Cuvie, who finds a mysterious cylindrical machine and opens it to discover a woman suspended in a field of energy. He closes the machine as the others approach and order him out into space.

He launches and looks back to see a bomb flying straight for him. The explosion hurls him deep into space, turning his AT into a coffin...until a warship of the Melkian army picks him up. The officer in charge, Captain Rochina, interrogates Chirico about his involvement in the raid, and demands to know the whereabouts of the "Prototype." but Chirico cannot answer. Taken to Planet Melkia, he is tortured further but escapes his prison and flees, remembering the image of the woman he saw on Lido. What he does not yet realize is that there are plots within plots-and that his destiny is linked with hers in a way that will change the galaxy forever.

Months pass, in which a peace treaty is signed between the Gilgamesh and the Balarant. Chirico wanders across Melkia to the city of Uoodo, a dirty pesthole of vagrants and is taken over by Borough and Iskui, two officers who conducted the Lido raid. They now conceal their identities and drain the city purpose in their organization, the Secret Society.

Chirico hides out in a junkyard and meets a trio of Uoodo citizens: Gotho (a weapons dealer), Coconna (a street girl), and Vanilla (a black marketeer). Realizing Chirico is a former AT pilot, Gotho sets him up as a contender in one of Uoodo's Battling arenas, where spectacular gamble on AT combat games. Chirico goes along with it, but his actions soon draw the attention of both the police and a mysterious woman called "The Phantom Lady."

Chirico clashes with the Police in a cat-and-mouse game that is watched intently by Captain Rochina of the Melkian army, who intends to track Chirico back to the stolen "Prototype." Eventually, Chirico discovers that The Phantom Lady is the same woman he saw on Lido. She was in an early stage of development at the time, and her real name is Proto-one. She is a new weapon, a genetically-enhanced warrior called a "Perfect Soldier." Her artificial nature requires that she periodically bathe in jijirium energies, and therefore she cannot escape her masters. Chirico gives her a new name: Fyana.

When Rochina discovers that the two have made contact, he orders an AT attack on Uoodo in order to capture the Secret Society officers and recover Proto-One. Rochina fails at both tasks, and Fyana escapes with her superiors, leaving Chirico behind in the midst of the bloodbath.

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