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| Havnar Bóltfelag (FER)-Lombard Tatabánya (HUN) |
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| Trans Narva (EST)-Ceahlăul Piatra-Neamţ (RUM) |
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| Araks Ararat (ARM)-Sigma Olomouc (RCH) |
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| Floriana (MAL)-Stabæk (NOR) |
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| Kocaelispor (TUR)-Atlantas Klaipėda (LIT) |
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| Linzer (AUS)-Hapoel Petach-Tikva (ISR) |
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| Glenavon (IRL)-Slaven Belupo (CRO) |
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| Zagłębie Lubin (POL)-Viljash Masalli (AZE) |
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| Ozeta Dukla Trenčín (EVQ)-Dinaburg Daugavpils (LET) |
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| Primorje Ajdovščina (ESL)-Westerlo (BEL) |
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| Västra Frölunda (SUE)-Zrinjski (BOS) |
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| Cibalia (CRO)-Obilić (YUG) |
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| Dinamo Tbilisi (GEO)-Standard Lieja (BEL) |
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| Dnepr-Transmash Moguiljov (BIE)-Silkeborg (DIN) |
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| Myllykosken Pallo (FIN)-Neuchâtel Xamax (SUI) |
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| Leiftur (ISL)-Lucerna (SUI) |
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| University College Dublín (EIR)-Velbăzhd (BUL) |
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| Nea Salamina (CHI)-Vllaznia Shkodër (ALB) |
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| Pelister Bitola (MAC)-Hobscheid (LUX) |
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| Cwmbran Town (GAL)-Nistru Otaci (MOL) |
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| Nistru Otaci-Wüstenrot Salzburgo (AUS) |
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| Zenit San Petersburgo (RUS)-Primorje Ajdovščina |
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| Perugia (ITA)-Standard Lieja |
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| Nea Salamina-Austria Viena (AUS) |
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| Stabæk-Auxerre (FRA) |
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| Dinaburg Daugavpils-Aalborg (DIN) |
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| Linzer-Marila Příbam (RCH) |
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| Atlantas Klaipėda-Bradford City (ING) |
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| RCD Mallorca (ESP)-Ceahlăul Piatra-Neamţ |
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| Chmel Blšany (RCH)-Dnepr-Transmash Moguiljov |
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| Sedan (FRA)-Leiftur |
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| Neuchâtel Xamax-Stuttgart (ALE) |
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| Zagłębie Lubin-Slaven Belupo |
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| Lombard Tatabánya-Cibalia |
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| Pelister Bitola-Västra Frölunda |
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| Velbăzhd-Sigma Olomouc |
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| *Victoria técnica de Auxerre en el segundo partido (el resultado original fue triunfo francés por 4-2) por alineación indebida de un jugador en el conjunto noruego. | ||
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| Celta Vigo (ESP)-Pelister Bitola |
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| Aalborg-Udinese (ITA) |
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| Sedan-Wolfsburgo (ALE) |
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| Marila Příbam-Aston Villa (ING) |
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| Chmel Blšany-Kalamáta (GRE) |
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| Racing Lens (FRA)-Stuttgart |
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| Bradford City-Waalwijk (HOL) |
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| Rostselmash Rostov-na-Donu (RUS)-Auxerre |
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| Slaven Belupo-Sigma Olomouc |
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| Standard Lieja-Wüstenrot Salzburgo |
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| Ceahlăul Piatra-Neamţ-Austria Viena |
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| Zenit San Petersburgo-Lombard Tatabánya |
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| Sigma Olomouc-Chmel Blšany |
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| Stuttgart-Standard Lieja |
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| Zenit San Petersburgo-Bradford City |
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| Celta Vigo-Aston Villa |
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| Austria Viena-Udinese |
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| Auxerre-Wolfsburgo |
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(Forman parte de la Segunda Eliminatoria de la Nueva Copa de la UEFA 2000-01) |
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| Sigma Olomouc-Udinese |
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| Celta Vigo-Zenit San Petersburgo |
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| Auxerre-Stuttgart |
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