| Dear friends Here is a lot of links ,which will be helpful for anybody who would like to work in bioinformatics .All the links in this page correspond either to free Software or Shareware. |
| This is an excellent tool for sequence alignment of proteins and compares the target sequence with the swall database .It also has added features like clustalw,M-View,etc are incorporated within it ,so that multiple sequence alignment can also be obtained.. |
| This program is used to design the3D structure of a protein whose sequence is known . This gives us a list of templates upon which the proteins structure is to be modelled.this has a web interface so that one can easily work using windows platforms.This works on the principle of Neural Networks. |
| This program is developed by Sali group.this is used to obtain a 3D Structure of a protein whose amino acid sequence and its alignment with the template is known.This can be used under all the platforms except windows. One can effectively model the sidechains using this program.It can also act as an interface to programs like INSIGHTII,AUTODOCK,etc.. This program is not available under the web interface under Windows OS. |
| This program can be used to verify or validate the 3D structure with the template.the output of this program would be in terms of a curve describing the accuracy of the query structure with the template |
| The phi psi angles of a protein decides its proper conformation and in turn speaks about the function. This forms an important parameter in deciding the accuracy of the predicted structure.The knowledge of the position of the residues can be known with the help of this program. |
| TOOLS USED IN BIOINFORMATICS |
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