Gene: maps to 11q22.3. This gene is composed of 10 exons and 9 introns and spans over 12.5 kb. The overall organization of the gene is similar to that of other MMP genes clustered at chromosome 11q22, including MMP-1, MMP-7, and MMP-12 (macrophage metalloelastase), but is more distantly related to genes coding for MMP-11, MMP-2, and MMP-9, which map outside of this gene cluster. Nucleotide sequence analysis of about 1 kb of the 5'-flanking region of the collagenase-3 gene revealed the presence of a TATA box, an AP-1 motif, a PEA-3 consensus sequence, an osteoblast specific element (OSE-2), and a TGF-beta inhibitory element. DNA binding analysis with nuclear extracts from HeLa cells revealed the formation of specific complexes between collagenase-3 promoter sequences containing the AP-1 site and nuclear proteins. The presence of this AP-1 functional site, which is able to confer responsiveness to a variety of tumor promoters and oncogene products, amy contribute to explaining the high-level expression of collagenase-3 in breast carcinomas and degenerative joint diseases (Pendás A.M. et al., 1995, 1997).
mRNA: size: ? kb. Northern blot analysis of RNA from normal and pathological tissues demonstrated the existence in breast tumors of three different mRNA species, which seem to be the result of the utilization of different polyadenylation sites present in the 3'-noncoding region of the gene. By contrast, no collagenase-3 mRNA was detected either by Northern blot or RNA polymerase chain reaction analysis with RNA from other human tissues, including normal breast, mammary fibroadenomas, liver, placenta, ovary, uterus, prostate, and parotid gland (Freije J.M. et al., 1994). However, MMP13 was found to be expressed by chondrocytes in human osteoarthritic cartilage (Mitchell P.G. et al., 1996).
Protein: the cDNA encodes a polypeptide of 471 amino acids. The predicted protein sequence displays extensive similarity to the previously known MMPs and presents all the structural features characteristic of the members of this protein family, including the well conserved PRCGXPD motif, involved in the latency of the enzyme and the zinc-binding domain (HEXGHXXXXXHS). In addition, MMP-13 contains in its amino acid sequence several residues specific to the collagenase subfamily (Tyr-214, Asp-235, and Gly-237) and lacks the 9-residue insertion present in the stromelysins (Freije J.M. et al., 1994). MMP-13 is able to degrade fibrillar collagens. The expression of MMP-13 in osteoarthritic cartilage and its activity against type II collagen suggest that the enzyme plays a significant role in cartilage collagen degradation (Mitchell P.G. et al., 1996)
See also:
structural and functional characteristics of MMPs
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