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Nothing Important Happened Today- #9X02-While the FBI Brass is still trying to stop them, Scully, Doggett, Reyes, and Skinner, find a connection to their case.
Nothing Important Happened Today II- #9X02-Scully unofficially helps Doggett and Reyes in solving the deaths related to water contamination.
Daemonicus- #9X03-With Scully reassigned to Quantico, Reyes and Doggett try to solve their first case together about a series of satanic ritual killings.
4-D-#9X04-A man threatens Doggett and Reyes in a parallel universe.
Lord of the Flies-#9X05-A teenager dies from what looks like a daredevil stunt for a cable TV show.
Trust No 1-#9X06-Scully is hopeful about being reunited with Mulder when a woman gives her more information about what drove him into hiding.
John Doe-#9X07-Doggett wakes up in a small Mexican town with no memory of who he is or where he came from.
Hellbound-#9X08- Reyes is attracted to a case where the victims are skinned alive. Provenance-#9X09- The FBI hides it's investigation about new rubbings from a spacecraft from Scully, Doggett, and Reyes.
Providence-#9X10- Scully learns that Mulder might be dead, and fears for the life of her child who's been kidnapped by the alien cult.
Audrey Pauley-#9X11- Scully and Doggett look for answers that might save Reyes who has been involved in a horrible car accident.
Underneath-#9X12- A case from Doggett's past puts him at odds with Scully and Reyes.
Improbable-#9X13- Agents Scully and Reyes rely on numberology to help solve a series of murders.
Scary Monsters-#9X14- A little boy is scared of monsters hiding under his bed, but things are not as they seem.
Jump the Shark-#9X15- The Lone Gunmen help out Doggett and Reyes when Morris Fletcher shows up with information about supersoldiers.
William-#9X16- A disfigured man poses a threat to Scully's son.
Release-#9X17- After 9 years of searching for his son's killer, Doggett may have found the answers.
Sunshine Days-#9X18- A man's obsession with "The Brady Bunch" combined with his telekinetic ability leads Scully, Doggett, and Reyes to believe that they've found the ultimate X-File.
The Truth-#9X19-#9X20- Mulder is tried for murder infront of a Military Tribunal that seeks the answers to a real Government Conspiracy and The X-files.