| Stage | A | SA | PA |
| dataDyne Central - Defection | 0:12 | 0:50 | 11:09 |
| dataDyne Research - Investigation | 1:33 | 2:21 | 13:15 |
| dataDyne Central - Extraction | 0:56 | 2:45 | 5:56 |
| Carrington Villa - Hostage One | 1:19 | 4:04 | 12:23 |
| Chicago - Stealth | 0:16 | 0:36 | 0:58 |
| G5 Building - Reconnaissance | 1:10 | 1:55 | 2:26 |
| Area 51 - Infiltration | 1:16 | 4:02 | N/A |
| Area 51 - Rescue | 1:37 | 3:18 | N/A |
| Area 51 - Escape | 2:49 | 6:21 | N/A |
| Air Base - Espionage | 1:20 | 2:53 | N/A |
| Air Force One - Antiterrorism | 0:59 | 1:30 | 2:54 |
| Crash Site - Confrontation | 1:31 | 1:41 | N/A |
| Pelagic II - Exploration | 1:46 | 5:34 | N/A |
| Deep Sea - Nullify Threat | 4:05 | 12:42 | N/A |
| Carrington Institute - Defense | 0:55 | 4:08 | N/A |
| Attack Ship - Covert Assault | 2:42 | 3:23 | N/A |
| Skedar Ruins - Battle Shrine | 2:30 | 4:57 | N/A |
| Mr. Blonde's Revenge | 1:42 | 3:18 | 3:08 |
| Maian SOS | 1:48 | 2:19 | N/A |
| WAR! | N/A | N/A | N/A |
| The Duel | 0:03 | 0:06 | 0:12 |
| Combined Time | ?? | ?? | ?? |
