(vi)
Search for transcription factor binding-sites
TFSEARCH (Japan) TRES -
comparative promoter analysis TESS - Transcription Element Search System Cluster
Buster - dense clusters of motifs search Signal Scan
(NIH) TraFaC ConSite
- search for
transcription factor binding sites shared by two genomic sequences PromoterWise
(EMBL-EBI) - compares two DNA sequences allowing for inversions and
translocations, ideal for promoters PLACE - plant database PredictRegulon
-
predict regulatory protein binding sites & operons in prokaryote
genomes Oligorep
- oligonucleotids repeats finder
