Bioinformatics Web Sites at Bioinformatics research lab's Server,IILM-AHL,Greater Noida

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This list contains pointers to various information sources in computational molecular biology and work done at Bioinformatics Research centre,IILM-AHL. This is not an exhaustive listing and it only reflects what i found useful here at IILM-AHL,Gr.Noida.we have developed a Miror site of NCBI which is written in Biojava,It is the first ever program developed at IILM in the world of its own type.Wait for more software our lab has developed. Please report "dead" links to General biocomputing services at IILM-Academy of Higher Learning,Greater Noida(ADmin:-Parvez alam

ENTERZ.
It provides an interface to search the Enterz databases without using the web browser interface.
The Programing language used is JAVA.The NCBI Viewer also integrates many skins so that you can change to the one that suits your mood swings
NOTE:-NCBI Viewer requires java 1.6 runtime enviornment to work.The java 1.6 runtime enviornment can be downloaded from: Download JRE 1.6

NCBI Viewer can be downloaded from here BioInfobank Meta Server - Submit
BioInfoBank Metaserver The BioInfoBank Meta Server offers a gateway to well-benchmarked protein structure and function prediction methods. Structural models collected from the prediction servers are assessed using the powerful 3D-jury consensus approach.
FP7 Partner
Add BioInfo.PL bioinformatics lab to Your FP7 application
bioinfo.pl

Submit - Step 1

Your e-mail address:
Name of your sequence:
Amino acid sequence in one letter code:

Submission history

0 jobs were submitted from 59.94.101. in the last 7 days

General biocomputing services at IILM-Academy of Higher Learning,Greater Noida(Admin:-Parvez alam(Lecturer,Bioinformatics) !

Modeller news: Modeller is now available to all our users who possess a valid Modeller licence key. Click on the [model] link at the right end of an alignment on the 3D-Jury page to get to the Modeller submission page. Your model will be e-mailed to you.

Usage hints

  • Submit domains separately
  • Remove coiled coil regions
  • Jobs queued for more than 7 days for servers with queue>30 are skipped
  • Use is limited to 30 jobs per week per domain
  • Contact us in case of problems with interpretation of results
  • Some servers return only models, no alignments (target sequence is shown)
  • Results published on this server are public and can not be used for patenting

The Structure Prediction Meta Server provides access to various fold recognition, function prediction and local structure prediction methods. The Server takes the amino acid sequence of the query protein, the reference name for the prediction job, and the E-mail address as input. The E-mail address is used only for notification about errors during the execution of the job. The query sequence and the reference name are placed in the process queue. The Meta Server accepts only sequences, which have not been submitted before. In case of duplicate sequences the second user will be notified with a link to the previous submission. Sequences longer than 800 amino acids are not accepted by some services. The internal SQL database offers the possibility to find any previous jobs processed by the Meta Server using "regular expressions" addressing field like E-mail, Job Name and the host name, from which the job was initiated. Each server has its own process queuing system managed by the Meta Server. All results of fold recognition servers are translated into uniform formats. The information extracted from the raw output of the servers includes the PDB codes of the hits, the alignments and the similarity (reliability) scores specific for every server. Mapping of the hits to the SCOP and FSSP classifications are made either using known PDB representatives or alignment of the template sequence with the databases of proteins in both classifications. The secondary structure assignments for all hits are taken from the mapped FSSP (red for helices and blue for strands). Underscored amino acids indicate the first residue after an insertion in the template sequence. The Meta server provides translation of the alignments in standard formats like FASTA, PDB or CASP. The Meta Server is coupled to consensus servers. They provide jury predictions based on the results collected from other services. Not all fold recognition servers are used by the jury system. The data stored on the meta server is available through http://meta.bioinfo.pl/data/JOBID/. Jobs older than 2 months are not shown. The Meta Server is only a set of programs aimed to process and manage biological data, while the predictive power of the service comes from (mostly) remote prediction providers.

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  • ReNaBi (France) HGMP Resource Centre (Hinxton, UK)
  • GenomeNet WWW Server (Kyoto, Japan)
  • Center for Information Biology (Mishima, Japan)
  • Pôle Bio-Informatique Lyonnais (Lyon, France)
  • European Bioinformatics Institute (Hinxton, UK)
  • DKFZ Theoretical Bioinformatics (Heidelberg, Germany)
  • ExPASy Molecular Biology Server (Geneva, Switzerland)
  • The Danish Biotechnological Database (Aarhus, Denmark)
  • National Center for Genome Resources (Santa Fe, USA)
  • National Center for Biotechnology Information (Bethesda, USA)

    Molecular databases

    General nucleotide databases

    General protein databases

    Specialized databases