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This half hour Cartoon Network show takes place between Attack of the Clones and Revenge of the Sith and is the second of the Clone Wars animated series. The first was a cartoon, this is 3D CGI.
| # | Description |
| 101 | Ambush - Count Dooku ambushes Jedi Master Yoda's ship while he is on his way to Toydaria; Yoda and three clone troopers face off against Count Dooku's assassin Ventress and he droid army. 10/3/08 |
| 102 | Rising Malevolence - The Separatists terrorize the clone Starfleet with a mysterious new weapon; Anakin and Ahsoka race to save Jedi Master Plo Koon. #102. 10/3/08 |
| 103 | Shadow of Malevolence - Anakin utilizes new long-range Y-wing bombers to lead a strike on General Grievous' warship. 10/10/08 |
| 104 | Destroy Malevolence - General Grievous takes Padmé Amidala and C-3PO hostage; Obi-Wan and Anakin must save the Senator and complete the destruction of Malevolence. 10/17/08 |
| 105 | Rookies - Clone Commanders Rex and Cody must inspire their rookie unit in order to stave off a Droid Commando invasion. 10/24/08 |
| 106 | Downfall of a Droid - When R2-D2 is lost during a battle, Anakin must find him before the Separatists discover the secrets locked within his memory banks. 11/7/08 |
| 107 | Duel of the Droids - Anakin, Ahsoka and an R3 embark on a rescue and sabotage mission when they discover the whereabouts of R2-D2. 11/14/08 |
| 108 | Bombad Jedi - When Jar Jar Binks and C-3PO fight to save Padmé Amidala from Viceroy Nute Gunray, he is mistaken for a Jedi Knight. 11/21/08 |
| 109 | Cloak of Darkness - Ahsoka and Jedi Master Luminara escort Viceroy Nute Gunray to trial; Count Dooku dispatches his apprentice assassin to free the prisoner. 12/5/08 |
| 110 | Lair of Grievous - General Grievous proves where his allegiance lies at the expense of the Jedi. 12/12/08 |
| 111 | Dooku Captured - Dooku crash lands in unfriendly territory and is taken prisoner. Anakin and Obi-Wan travel there to arrest him. 1/2/09 |
| 112 | The Gungan General - Anakin and Obi Wan are taken prisoner while negotiating Dooku's ransom; the Jedi and the Sith form an unlikely alliance. 1/9/09 |
| 113 | Jedi Crash - When Anakin is injured, Aayla Secura teaches Ahsoka about avoiding personal attachments. 1/16/09 |
| 114 | Defenders of Peace - Lurmen must decide whether to lie down to the Separatists or fight with Anakin, Ahsoka and Aayla Secura. 1/23/09 |
| 115 | Trespass - Anakin and Obi-Wan are caught in the middle of a conflict between an ice world and a nearby moon. 1/30/09 |
| 116 | Hidden Enemy - Anakin and Obi-Wan discover evidence of a traitor amongst their ranks. 2/6/09 |
| 117 | Blue Shadow Virus - Anakin, Obi-Wan and Ahsoka try to save Padmé and Jar Jar and stop the release of a deadly virus. 2/13/09 |
| 118 | Mystery of a Thousand Moons - After the Blue Shadow Virus is released, Anakin and Obi-Wan have 48-hours to find the antidote and save their friends. 2/13/09 |
| 119 | Storm Over Ryloth - Ahsoka disobeys Anakin's orders and loses most of her squadron, forcing Anakin to teach her a lesson. 2/27/09 |
| 120 | Innocents of Ryloth - Obi-Wan and a small clone force discover that a town's residents are being used as a human shield. 3/6/09 |
| 121 | Liberty on Ryloth - Mace Windu must convince Cham Syndulla to help him save the capital city. 3/13/09 |
| 122 | Hostage Crisis - Bounty Hunters seize control of the Senate Building in order to free crime lord Ziro the Hutt. 3/20/09 |
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