Scully and (usually) Mulder expecting a new bundle of joy.
After the Future by Donna
Bambino by Candy Cockrell
The Beach by Devin
Ben by Jess
Birth: Ocean by Jenrose
The Butterfly Universe by Bugs
The Child by Wintermoon
Could've Been by RogueAngel
Daniel/The Couch series by MacSpooky & Ten
The Discovery Series by Erin Blair
The Eden series by Char Chaffin
Ersatz Promises
by Susanne Barringer and Suzanne Schramm (FYI - doesn't end happily)
Every step 1: Just You by JayJay (agent Pendrell's baby)
The Family G-Man by Neoxphile and Felinefemme (a few pregnancies...)
Gift Of Hope by Kristyn Collins
It's Only Ever Been You by kimo-sabe (Skinner's baby)
The Marriage series by Juliettt
Meant To Be by Jen(JenR13)
Mulder and Scully go Trick-or-Treating by dmulder
Mulder's Sperm by Melissa
Mulder's Sperm + Ubereggs = Little Pink Babies by Melissa
Offspring part 1
pt 2
pt 3
pt 4
pt 5 by Deslea R. Judd (Skinner's baby)
Promise with Your Heart by Kathy Williams
The Sound Of Wind Chimes by Sarah Stegall
The Spell series by Kelli Rocherolle
The Taking Series by Jenn Chiprich
Three Wishes by Miranda
Trilogy 3: The Announcement by Erin Blair
The Way Things Are by Sukie Tawdry
A Wonderland Life by Kristen (Skinner's baby)
A Wonderland Life 2 by Kristen (Skinner's baby)
Season 7 (set before Requiem)
Once-upon-a-time spoilerfic? Darn good guesses? Who knows
87 Shades of Black I-III by Slippin' Mickeys
Baby Mine by Debbie Gramlich
Baby, Oh Baby! by Cassie Consten
The Climb by Starbuck2824
Dark Seed by Bugs
The Dream Series by Dream Cole
Finally Home by Natalie Scully
Four is a Wonderful Number by Agent Leki
Intimacy Deux by MoJo
Journal 2000 by MD1016
Landfall by Ambress
A Legacy by dlynn
Life On The Edge series by Kate Rickman
Mystery by Tesla (pregnancy implied)
One Glimpse of His Eyes by nikki
Pater Familias by OneMillionAndNine
The Ratling 1: Swollen Ankles by Tara Leigh Thorne
Second Birth by Alien Girl
Syadiloh by MustangSally & Rivka T
Tidings by Ambress
This Fragile Universe WIP by Neoxphile
Unreasonable Facsimile by Deenalynn
Zoe series by Smurf
"Requiem" thru Season 8
aka canon pregancy stories, though the baby often isn't a boy named William given many were written prior to Existence
After Mulder: I Making Circles by Kimberly
After Mulder: II Moving Mountains by Kimberly
All Which It Inherit 3: Such Stuff As Dreams Are Made On by Brandon D. Ray
Alone in a
Crowded Heart by Tess
Arms Wide
Open bellefleur
As Darker Grows the Night by Leslie Sholly
The Baby Dance by Ericka D
Birth by TeeTee
By Falling In And In by Aloysia Virgata
The Caretakers by Kelly Keil
the Changed series by Cathey Scully
Christopher Ryan Scully series by Jori
Contemplating The Unbelievable by Ewa
Cunegund's Restoration, or, The Best of All Possible Worlds, Really by Livia
The Cure by jawsoxz3
Daddy by Angela W (password is "avalanche")
The Dance by DM
Death's Door is Standing Wide Open by SkepticalScully
Delivery at the Corner of Dupont and Connecticut by Rachel Wilder
Doctor, Copper, Sailor, Corpse by Scarlet Baldy
Domestic
Inclinations by Gwinne
Dreaming About Babies by Char Chaffin
Eclipse by Diana Battis and alanna
Eyes of A Child by LovesFox
Family Matters by Devin
FBI Deliveryman by Pattie
Feathers by Bluesea
The Female of the Species by Wylfcynne
First Born by diamondlife17
The Flick of a Switch by Aislinn Carter
The Fourth Wish by Neoxphile
Foreseeing Premonition by Andi Mitchell
The Girl With My Sister's Face by Henle Girl
Glass Landscape by Annie Sewell-Jennings
Great
Expectations by bellefleur & Emily Sims
Heart
Turned Inward by Keleka
His Child by Jaime Lyn
How I Told Him by Trekkie6
How She Told Me by Trekkie6
I Know What You Did... by Henle Girl
Impressions by PD
In Rama, A Voice Was Heard by dlynn
In Rama 2. But Hope That is Seen by dlynn
In Rama 3. Day by Night and Night by Day by dlynn
In The End by SnickJF
In The Next Moment by Tissa
Jane by
shippyphile
Journey by Susan
Legitimate by beduini
The Lullaby series by Donnilee
Lullaby Voice by PD
The Marriage series by Angela W
Misconception by Christina
A More Perfect Fit by DM
More Than The Clouds by Little Starbuck*
The Most Wonderful Time of the Year by sylvia
Mulder's Son by jrfpatton
My Favorite Word by Mish
Neither Moon Nor Earth by Sabine
Nova by Angel
Once Upon a Time: Against All Odds by Meaghan McScully
Once Upon A Time: Reunited by Meaghan McScully
One of the Good Guys by Jenna Tooms
Our Existence by Devin
Oxytocin by Ambress
Partners, Friends and Lovers by Wildafox
Promise for the Future by Agent Diana Fowley
Reflection of the Truth by Erin Blair
The Sky is Broken by TH001
Someone Else's Child by ScullyJr2
Something Rational by agent myers
Something Rational 2. Won't Fear Love by agent myers
Something Rational 3.Taking You Home by agent myers
Something Rational 4. End The Struggle by agent myers
They're Here by L. M. Shard
Truly, Madly, Deeply by Jenna Tooms
Twins by Teetee
A Unique Creation by Lari R
Unmarried Mother by Halrloprillalar
Velvet by Shipper M.D.
Wait Until Your Father Gets Home by Lorri
when we are three by beduini
Who Knew? by ElleThom
Wishing and Wanting by Starrlyte
Within the Heart of a Mother by Char Chaffin
The Wrong Kind of Paradise by Martha
Your Father Came Home by Lorri
Your Father's Child by Lorri
Season 9(ish)
After William by Philiater (Skinner's baby)
Draw Down the Moon by Jenna Tooms (Doggett's baby)
the Everything series by Eral C
My Favorite Day by Mish
Mysterious Ways by Neoxphile
They're Here 2 by L. M. Shard
They're Here 3 by L. M. Shard
Without You by Jennis524
Post-Series
Absolution
by Tlynn
Adding to the Family by xfilesjunkie
After The Truth series by Pattie
An Alternate Reality by Fatcat
Biting the Bullet by Starbuck_Jayne
The Burpday series by Kelly J. Thompson
Christmas Delight by Erin Blair
A Christmas Wish by Erin Blair
A Cold Night by Girlie_girl7
The Empty Chair by Sara B
Faith I: The Substance of Things Hoped For by Dawn
Faith II:
Reservations for Two by Dawn
Feathered By The Moonlight by Brie
A Few Good Things Remain by KimK
The Final Stand by Ashley
Flight into Egypt by Vickie Moseley
Four Corners Cycle - Gravity by Spookey247
Happy 40th Scully! by Erin Blair
In This World by TLynn
A Life series by Char Chaffin
The Life They Now Lead by Lilxgirl(AKA Abigail)
Mad Season by Shelby Parker
The Marionette Rebellion by Supernova
Miracle by Jennis524
Nebraska by Emma Brightman
OB-GYN by Girlie_girl7
Reason For Hope by crisrbn
The Return by Grey Woman (Doggett's baby)
Reunited II by Keri
Sullen Afternoon by Erin Blair
Twice Blessed by Katchat
Visitor in the Desert by Gillian Leigh
Water Water Everywhere by afg
William Watches Daddy by Erin Blair
The Family Files by Wildafox0619
Post-IWTB
fics specifically set post-movie
Iunctio ut Redimio – Book 1 by Kay
Iunctio ut Redimio – Book 2 by Kay
Alternate Reality
fics that have nothing to do with The X-Files, but feature Mulder and Scully anyway
Coach II by Gillian Leigh
When Fate Takes A Hand by Madam F
Timeline Unspecified
AU stories without spoilers or dates to nail the timeframe
Day Becomes Night Day Becomes Night by Jamie Tanquary
Baby Plans by Kristen
Second Coming by Char Chaffin
Ready for something different? Try the Pregnant Reyes list next!