Specific Immunity

THIS YEAR IN MICROBIOLOGY

Worm diet encourages immune system

Use of New Vaccines to Fight Common Diseases; Flu Vaccine Improvements; Malaria Vaccine

Use of Umbilical Cord Blood to Repair Immunity; Stem Cells to Grow Organs

Longevity Gene Found

Designer Babies: Eliminating Bad Genes

Eating pizza helps the immune system 4/99

 

INTRODUCTION TO IMMUNITY

The UNDERLYING UNIVERSAL PRINCIPLE of the immune system deals with recognizing SELF FROM NONSELF (FOREIGN) based on the principle of ligand/receptor binding described in the figure above. In a competitive and deadly world, self is usually GOOD and nonself is usually BAD. This LAW defines both the strengths and the weaknesses of the immune system and foreshadows its inherent problems. It is like the predicament one often sees portrayed in the movie plots where the hero/heroine find themselves in a dangerous situation with a weapon in hand and surrounded by people of unknown character, each claiming to be their friend ("trust me") while warning the hero/heroine that the others are their enemies. The dilemma is "how do you know who to trust and who is telling the truth?"; There is a scene in "Indiana Jones and the Last Crusade" where Jones has to chose between a beautiful woman and his father that illustrates the complexities of this problem. The immune system can thus be viewed from two perspectives:

How is SELF recognized?

How is NONSELF (foreign) recognized?

Clearly these are two sides of the same coin and the answer to one inevitably leads to understanding the other. Consider the DEVELOPING EMBRYO in a multicellular organism like a mammal; in a real sense to the mother the embryo is NONSELF!! With immunity a multicellular organism must take into account the fact that its cellular constituents, except for identical twins, belong to a very unique gene pool of ONE. However, although a fetus is not SELF, it can not be attacked as nonself if the species is to survive. Once self recognition is achieved the multicellular organism must now differentiate between self and ALL the other NONSELF material on the planet, including its own progeny; clearly a formidable task.

As has been described previously, the problem of COMMUNICATION between biological molecules such as enzymes, their substrates, and their regulatory molecules, as well as in phage/virus binding etc. has been solved through the principle of SPECIFIC LIGAND/RECEPTOR INTERACTION. Thus the problem of differentiating between self and nonself is not one of developing a "specific recognition system", since that already exists, but how does a multicellular organism design a system for discriminating self from the millions of NONSELF substances in the environment throughout its life time? It turns out that the immune response depends upon the process of genetic recombination to solve this problem.

One final point: We CAN NOT SURVIVE without a functioning immune system. Without it, no amount of antibiotics or medical treatment can keep us alive for more than a brief time. This is painfully illustrated by the death of AIDS victims.

LEARNING GOALS AND OBJECTIVES

To recognize the various types and levels of immunity

To learn the basic components of the immune system

To understand how the immune system works at a fundamental level

To gain an understanding of the future of immune research and its potential impact on OUR LIVES.

Women in a number of undeveloped countries put breast milk in the infected eyes of their infants. Why might they do that? If you were a health worker would you advise them to continue this "treatment" or would you warn them that milk is a great medium from the growth of microbes and advise them to stop doing this?

VOCABULARY I

THE SPECIFIC IMMUNE SYSTEM = Previously we have discussed the nonspecific defense system that protects us, more or less, from all pathogens. The specific immune system (often called the IMMUNE SYSTEM) protects us against SPECIFIC NONSELF ORGANISMS and substances. It is an INDUCED response; that is it must be TAUGHT which things to attack.

ANTIGEN = An antigen is anything that ELICITS the formation of a specific immune response. Older definitions limits the definition of an antigen to ".....formation of an antibody.", however, as you will learn there are two levels (duality) to the immune system.

EPITOPES = These are the PARTICULAR UNIQUE CHEMICAL GROUPS on a molecule that are antigenic; i.e., that elicit a specific immune response.

ANTIBODY = A SPECIAL GROUP OF SOLUBLE PROTEINS that are produced in response to foreign antigens. To view the structure of an antigen, antibody and epitope see the RasMol:Gallery and view the section on Antibody and antigen binding. Also take a look at the following:

What the heck is an antibody? | More pictures of antibodies | Index of antibody movies. You'll have to have the right "Helper Applications" and a lot of memory to see these so take care.

This site contains the best tutorial on antibody structure I've seen (Go to INDEX>ARCHITECTURE OF PROTEINS>LECTURE 5>STRUCTURE OF HUMAN IMMUNOGLOBULIN G). It requires the helper application Chime, Netscape 3.0 or better and a fast computer. It is fantastic, although it is advanced for Micro 101/102 students, if however you go through this & learn it, I guarantee that you'll understand what antibodies are and how they work.

IMMUNE CELLS or LYMPHOCYTES= These are the VARIOUS CELLS of the specific immunity system that respond to SPECIFIC foreign or nonself antigens.

FAQ: "Exactly what are ANTIGENS and how can they cause problems like allergies?"

Antigens are usually MACROMOLECULES like proteins and polysaccharides; small molecules usually make POOR antigens, but they can be antigenic under certain circumstances. For example, antibodies against hormones are how pregnancy tests work.

Antibodies are a group of soluble, PROTEINS that have UNIQUE BINDING SITES on them which recognize and bind to the EPITOPES of antigens. As previously described with enzymes, allosteric sites and other binding site-situations, the antibody binding sites are HIGHLY SPECIFIC. There are SEVERAL TYPES of antibodies with a variety of different functions in the specific immune response which will be discussed as appropriate. Figure 1 illustrates the relationship between an antigenic molecule, its epitopes and the soluble antibodies produced against it.

Antigen Epitopes (5018 bytes)

Figure 1. Epitopes. On the left is illustrated a folded, functional protein. It might be an enzyme, or a cell wall receptor site protein or a ribosomal protein etc. On this protein there are certain GROUPS OF ATOMS that comprise EPITOPES. These groups are defined as epitopes BECAUSE THEY ELICIT AN IMMUNE RESPONSE and for no other reason. Since each of the epitopes is a DIFFERENT and unique chemical cluster, each one of them induces a UNIQUE ANTIBODY. Each antibody will bind tightly to its particular epitope and NOT TO ANY OF THE OTHERS. Within this cartoon lies the core information one needs to understand how the immune system works. That is, if you know how one car works, you have the core information on how all cars work, only some details differ.

INNATE IMMUNITY = This can best be described as GENETIC IMMUNITY or immunity an organism is BORN WITH. Part of this immunity is the NATURAL DEFENSE SYSTEM described in the previous chapter. This type of immunity can be an immunity that applies to the vast majority of the members of a species (SPECIES IMMUNITY), or it can be an immunity that applies to only a certain subgroup within a species down to a few individuals within that species. Some examples are:
Cattle suffer from the cowpox virus, but appear to have a SPECIES IMMUNITY to the closely related smallpox viruses, whereas;
Smallpox is a deadly disease to humans, but cowpox is, in humans, a mild localized skin infection (usually on the hands).
Humans are susceptible to the HIV virus, but most of our related primates are immune to HIV, but they suffer from HIV-like viruses to which we appear to be immune.

Within a species there may exist SUBGROUPS that are STATISTICALLY immune or resistant to particular pathogens. For example:
Northern Europeans appear to be more resistant to tuberculosis than are most Africans, whereas Africans are innately resistant to a variety of African diseases to which "whites" are highly susceptible.
Because of the genetic variation within every species INDIVIDUALS are statistically more resistant to some diseases, and more susceptible to other diseases. Most of you know those within your own families that "rarely" get colds or the flu, while other family members repeatedly catch respiratory infections. While there are many factors (diet, stress etc.) that could explain these individual differences, one of them is that certain COMBINATIONS OF GENES render some more resistant to the common cold viruses, whereas others are very susceptible.

INNATE immunity is different from the SPECIFIC immunity discussed in this section. However, both system interact so as to provide better protection to the host.

ACQUIRED or ADAPTIVE IMMUNITY = This refers to immunity against SPECIFIC ANTIGENS that one acquires in one of two ways, ACTIVE or PASSIVE. These are subdivided into the following further categories:
ACTIVE NATURALLY ACQUIRED IMMUNITY = This occurs when individuals suffer from a natural infection of a pathogen and become immune to that pathogen upon recovery (e.g. chickenpox).
ACTIVE ARTIFICIALLY ACQUIRED IMMUNITY = This occurs when individuals are actively vaccinated with an antigen that confers immunity.
PASSIVE NATURALLY ACQUIRED IMMUNITY = This occurs when individuals receive antibodies from their mother by a natural process, such as in BREAST MILK or in-utero transfer of antibodies from mother to fetus. In mammals, mother's milk is know to contain a large concentration of antibodies and other antiviral and antibacterial substance that protect the newborn infants. Further, the mother's antibodies cross the placental barrier, particularly near the end of term. In both these circumstances the infant is only resistant to whatever the mother is resistant to.
PASSIVE ARTIFICIALLY ACQUIRED IMMUNITY = This occurs when individuals are injected with POOLED serum from immune individuals that contain antibodies against a large number of pathogens. In the case of humans, a fraction of blood serum, GAMMA GLOBULIN, that is highly enriched in antibodies is injected into individuals that have been exposed to certain pathogens. The GAMMA GLOBULIN is obtained from pooled sera from many individuals and thus contains a broad spectrum of antibodies.
Gamma globulin is the material given to people who have been exposed to the hepatitis A virus in the contaminated strawberries in the spring of 1997.

LENGTH OF IMMUNITY

PASSIVE acquired immunity is short lived as the antibodies eventually die off or are themselves removed from the body as foreign protein. Since the person receiving the passive dose DOES NOT PRODUCE their own antibodies, the immunity is TRANSIENT.

The ACTIVE forms of immunity are generally long lived, particularly in the case of recovery from a CLINICAL INFECTION. Sometimes this immunity is lifelong, but in other cases it is not. Vaccinations may induce long-lived immunity, but recent data indicate that vaccinations may not last as long as once was hoped. For example, there is a very effective vaccine against tetanus, but it lasts only a few years and every year hundreds of people who have been vaccinated against this bacterium die because they have not gotten their BOOSTER SHOTS (vaccinations given periodically to booster the immunity of previous vaccinations) every three to five years.

FAQ about vaccines and vaccination

What are vaccines?

Currently vaccines come in three forms
LIVING ATTENUATED MICROBES: These are mutants of microbes that have lost the ability, either naturally or by treatment in the laboratory, to produce the dangerous, clinical disease. Two example are the cowpox virus and the polio vaccine virus. A vaccination consists of infecting you with a living microbe which then produces a limited infection. Because these attenuated strains are weak the immune system of normal healthy people quickly kill and eliminate them from the body. During this process the infection elicits a vigorous immune response that protects the host from infection by the related virulent, disease-producing form of the pathogen. Live vaccines produce the best immunization because they closely imitate the real thing.
DEAD MICROBES: These vaccines consist of growing up cultures of the virulent, disease-producing microbial strains and killing them in such a way that they retain their ability to stimulate the body to produce an immunological response to the live form. Examples include anthrax and rabies vaccine.
VIRULENCE COMPONENTS OF PATHOGENS: These vaccines consists of substances isolated from the virulent strains, such as polysaccharide material or proteins components. No whole organisms, living or dead are present in these vaccines. Examples include the toxins of diphtheria, tetanus and botulinum and the polysaccharide from virulent pneumococci.
VACCINATIONS BY EATING: Experiments are underway to deliver vaccines through common foods like potatoes and bananas. Genes that make an antigen effective against a microbe are cloned into a common food. The food is eaten by the "patient" and the cloned-antigen stimulates the immune system.
DNA VACCINES: Vaccines consisting of DNA fragments that can be transformed into host tissue. Once there the DNA is transcribed and translated and the protein produced is seen by the specific immune system as FOREIGN material and an immune response is induced.

FAQ: "Are vaccines safe to use?"
It is never possible to prove that any medical treatment is totally safe for all people under every set of conditions. The safety of medical procedures and agents always carry a degree of risk, just as driving your car to work always carries a degree of risk.
The live vaccines present the highest risk because it is always possible that a mutation may occur that reverts the avirulent strain to virulence or that a particular individual will be susceptible to the avirulent strain; i.e., that it will be "virulent" only for that individual. This has happened in the case of smallpox where an occasional person, usually a child, develops a severe, often fatal, disease caused by the smallpox vaccine.
Killed vaccines have had safety problems when the lethal treatment failed to kill 100% of the microbes. The problem is that if you over treat the microbe to be certain that all the organisms are dead you can destroy the immunizing components and make the vaccine ineffective. So the killing treatments must balance. Also it is difficult to detect the one live organism present in a 1,000 liters of treated material, yet one live organism is sufficient to produce a lethal infection.
The use of chemical components of pathogens also carries some risks. Some people will react violently to these substances, usually in an allergic reaction, and they can be seriously harmed or even killed as a result. The DPT vaccine combination has caused such reactions.
Recent scientific studies have presented evidence that Haemophilus influenzae type b vaccination does NOT induce type 1 diabetes, nor is Pertussis vaccination a risk factor contributing to the rising rate of asthma and allergies.

Should we bother to immunize ourselves and our children? Isn't the US so safe that vaccinations are not needed anymore?
This is a decision that each individual must make for themselves and their children, but it should be an informed decision and not one made from scary tales told over the back fence or from the tabloids. Modern vaccines are about as safe as anything in this dangerous world. Everyone who drives or is driven on the highways is in far more danger of harm than they are being vaccinated.
The US is one of the safest countries in the world when it comes to communicable diseases, but we probably are not the safest. Diseases are always present and they do not recognize borders. We are so intimately connected with the rest of the world today that diseases can appear from anywhere. The strawberries or lettuce you just purchased at the supermarket yesterday may have come from a country with far less sanitation than we practice, or the person you sit by on the bus/subway may be a recent immigrant or traveler coming from another country that is rife with a disease the US is "free" of. In these cases your only real protection is vaccination. Think about it!

THE FUTURE OF VACCINES

The future of vaccination looks very promising due to three emerging technologies. These are, the use of DNA to vaccinate animals, including humans, new injection devices and novel drying techniques that convert vaccines into dry forms that can be stored for long periods without refrigeration:

DNA VACCINES
Recent research has shown that it is possible to use DNA to vaccinate animals and tests are currently being done on humans. The procedure works as follows:

DNA carrying genes that make a substance that elicits a strong immunological response in a host against a pathogen are identified, cloned and isolated.
This DNA is coated onto tiny beads that are fired at high velocity into the host's body (e.g. into the arm, or butt).
The DNA-coated beads penetrate the cytoplasm of cells without killing them.
The DNA comes off the beads and is transcribed and translated, but not replicated.
The translated product is recognized by the body as being FOREIGN and a vigorous immune response is initiated.

NEW DRYING TECHNOLOGIES 

Most vaccines require constant refrigeration to remain functional. This makes vaccination in remote areas of the world difficult and expensive, and is called the "refrigeration element". Maintaining a "cold chain" to remote areas like central Africa costs over $200 million per year. Recently it has been found that a number of living organisms can protect themselves from damage by drying if they contain a high concentration of the simple disaccharide sugar trehalose. Such organisms (cryptobionts) that have been completely dried can be returned to life, without apparent harm, by the addition of water.

This trehalose-based drying and stabilization technology is being applied to vaccine antigens. Measles vaccine dried with trehalose suffered no loss of activity after two months at room temperature compared with commercially dried material that lost >90% of its activity in the same period. Trehalose-dried DT&P vaccine could be stored at 60oC for 12 weeks without loss of activity.

INJECTION DEVICES 
With 1.2 billion vaccinations currently taking place every year and each one requiring a needle and syringe delivery, the safety hazard is a major concern. Accidents to heath personnel and the improper use of needles may be spreading as many diseases as it is protecting against. In the U.S. >$1.7 billion is spent every year to treat needle-stick injuries. Needleless drug delivery systems involving the injection of powders into skin tissue using a supersonic pulse of helium gas are being developed. This system is able to deliver both DNA vaccines and dried conventional vaccines.

LEVELS OF IMMUNE SYSTEM

The specific immune system exists throughout the body, but a major portion of it circulates in the blood and lymphatic systems, as they flow throughout the body. The human specific immune system is a two level or DUAL SYSTEM consisting of soluble antibodies and special immune cells. The two systems work intimately as a coordinated unit. Foreign material is dealt with by both components of this dual system. The cellular components of the specific immune system includes a host of specialized cells; new ones are being discovered all the time. The entire process of specific immunity is initiated by non-specific immune cells, the phagocytic cells of the nonspecific defense system, which act as general scavengers and a kind of "attack dogs". These cells engulf or ingest any material they perceive as foreign/nonself. Once inside these phagocytic cells the engulfed material is digested and its chemical components are processed for use by the specific immune system. The two components of the specific immune system are described in greater detail below.

Lymphocytes
Figure 2A. Lymphocytes. This figure shows examples of two normal white blood cells (WBC). The PMN stands for polymophonuclear because they contain many nuclei (the oval dark purple structures). A PMN is a nonspecific phagocytic WBC. The cell on the right is probably a LYMPHOCYTE of some type and thus is a component of the specific immunity system.

Blood CellsLymphocyteLymphocyteLymphocyte
Figure 2B. These four cells are various WBC. The one on the top left is a PLASMA CELL which makes antibody. Can you identify these same cells on the blood smears in lab and in the Atlas?

Shown in Figures 2 & 3 are some of the various white blood cells involved in the immune system. Some are part of the nonspecific defense system and some are components of the specific immune system. Telling the difference between these cells is difficult, but because their individual form (morphology) and relative numbers of the different types are important tools in disease DIAGNOSIS, they are carefully studied. A variety of different stains are used to help the medical technologist and pathologist distinguish between the different cell types. However, many are indistinguishable morphologically and can only be differentiated by antigenic differences. Click here to view immune cells.

Normal Blood
Figure 3A. Blood from a normal bone marrow. There are a variety of cells present in various stages of development or maturity, making it very difficult to accurately distinguish the types.

Mono Blood Cells
Figure 3B. Blood from a patient with infectious mono or the "kissing disease". This disease is common among college students for some unknown reason. There is a theory circulating that people actually enjoy the process of catching this disease. The atypical appearance of the lymphocytes is diagnostic of the disease.

One of the professions open to Microbiologists is that of Medical Technology. Medical Technologists are responsible for analyzing patient's fluids, including determining the types and numbers of the various different cells present in a patient's blood. Thus a Medical Technologist would be expected to identify each of the blood cells shown in Fig. 2 & 3. However, as computer imagery  gets better slides will be scanned by computers and diagnoses only verified by medical personnel.

THE TWO COMPONENTS OF THE SPECIFIC IMMUNE SYSTEM

THE HUMORAL IMMUNE SYSTEM

One part of the dual level specific immune system is called the HUMORAL system. The humoral system involves the soluble ANTIBODIES described above. These antibodies circulate through the blood and lymph system. When blood is spun in centrifuge (or allowed to sit quietly in the refrigerator), the red blood (RBC) & white cells (WBC) settle or PELLET to the bottom of the tube, leaving behind a straw-colored liquid called the SERUM. The antibodies, and other soluble components of the blood, are located in the blood serum. Antibodies are made by SPECIAL B-CELLS, called PLASMA CELLS that make and excrete huge quantities of antibody molecules.(Fig.3).

THE CELL-MEDIATED IMMUNE SYSTEM

The second component of the specific immune system involves a special class of cells called T-cells. There are many different types of T-cells and new ones are being discovered frequently. Each population T-cells has a unique role in the immune process. Although T-cells do not produce antibody, they contain antibody-like receptors on their cell surfaces that specifically bind to foreign ligands in exactly the same way that antibodies do. Further, they also have other receptors on their surfaces that identify other cells within the body with which they are designed to interact. They have many roles. One important role is to act as the HIT-MEN of the immune system. When a foreign cell is pointed out to these "killer cells" they gang up on it, beat the dickens out of it until there is nothing left but a few bit 'n pieces of garbage floating around. Once in while they go crazy and decide to attack their own host cells and then there is a serious problem (e.g. arthritis).

THE PHAGOCYTIC COMPONENTS OF THE IMMUNE SYSTEM

Cells of the #nonspecific defense system, known as macrophages, neutrophils and polymorphonuclear neutrophils, are involved in a complex relationship in which they recognize and then ATTACK NON-SELF MATERIAL, destroy it and process it for use by the specific immune system. All the components of the immune system are intimately tied together much like the members of a smooth running sports team or an army. They use chemical signals to each other to coordinate their defense of the host. This entire process is only partly understood and is so exceedingly complicated that it should keep a lot of biological scientists off the streets for a long time into the future (just ask their mates). But these scientists seem to need to eat (every time we train one not to eat they die on us) so they will be coming to you citizens FOR MONEY to pursue this research.

COMPLEMENT

Another important component of the specific immune system is a group of proteins called the COMPLEMENT SYSTEM. Complement is a GROUP OF PROTEINS that, like the antibodies, are soluble and reside in the serum. Complement is a COMPLEX OF ENZYMES that mainly act on foreign cells by punching holes in their membranes to cause their LYSIS AND DEATH. Complement works in concert with the SPECIFIC ANTIBODIES that "point out" the cells to be attacked by the complement; i.e., the antibodies act to "FINGER" (identify) a target cell and the complement acts as the "HIT MAN" that kills the targeted cell. In addition complement, plus antibody, designate which cells are to be engulfed by the phagocytic cells. Complement can also result in immunological damage to ones own cells in the case of diseases caused by faulty immune systems. One such reaction is the serious allergic response known as ANAPHYLACTIC SHOCK.

DEVELOPMENT OF THE IMMUNE SYSTEM

Now we come to the issue brought up in the introduction, namely: How does the body distinguish the good-guys from the bad-guys?

The steps in the immune system development are:

Stem cells, which are the PARENT CELLS of all immune cells, enter the liver of the fetus and develop to a point there.

From the liver some stem cells move into the bone marrow (at the center of the bones) where they differentiate into B CELLS and NATURAL KILLER CELLS.

Other stem cells move from the liver into the thymus gland located in the middle of your chest.

The thymic stem cells differentiate into a variety of T cells.

Other stem cells go on to differentiate into other blood cell lines such as macrophages.

Immunologists are making rapid headway in unraveling the complexities of these various differentiation's, but the differentiation process is extremely complex and subtle. From my perspective of >40 years in microbiology I have observed tremendous progress in the area of immunology. However, my guess would be that we are not even half way to a full understanding of the entire system. I am optimistic that the immune system will be completely understood in your lifetimes.

The immune system is spread throughout the entire body and includes the following (a partial listing):
 Adenoids & tonsils
 The lymph nodes & lymphatic system
 The Spleen, appendix and small intestine
 The bone marrow
 The thymus gland

Location of Immune System
Figure 4. This figure shows the location in the body of various components of the nonspecific and specific immune systems. The B cells and a variety of other lymphatic cells are made in the bone marrow. The lymph nodes contain the macrophages, B cells and T cells, which is why your lymph glands swell up and become tender to the touch when you have an infection. The thymus gland is the gland where the differentiation of the T cells occurs. Other macrophages, monocytes and phagocytes reside in the liver, spleen and lungs. Special immune cells have been found in the brain, in the skin and in the cells lining the intestine. Breast milk contains a variety of the mother's white blood cells that kill microbes in the infant's gut and stimulate the development of the infant's immune system as well as antibodies and 10 other microbial inhibitors (Sci. Am. Dec. 1995)

CLONAL SELECTION

Consider the problem an immune system faces. It must defend its host against thousands of unknown POTENTIAL PATHOGENS, each a MOSAIC of different antigens (epitopes). Further, it must distinguish between millions of self antigens and other millions of foreign antigens; the penalty for failure is DEATH by a pitiless nature. What makes this goal even more difficult is that many of the self-antigens are chemically very similar to the nonself-antigens. As the early immunologists defined this incredible diversity they were awestruck and puzzled as to how this could possibly be. It was one of these situations that was demonstrability true, but seemed impossible to achieve; but then life itself fits in that category doesn't it? As usual in science the answer came from the brilliant reasoning of a few people. The thought process that broke the "case" went something like this.

Instead of thinking that the immune system had to be INSTRUCTED AHEAD OF TIME as to which antibodies would be required throughout a life time, clearly an impossible task, N.K. JERNE suggested that the immune system was SELECTIVE rather than instructive. Jerne reasoned that the immune system must RANDOMLY make billions of different SPECIFIC-EPITOPE-BINDING ANTIBODIES and then let the antigens that accidentally stumbled into the host choose or select which antibodies would be produced in quantities large enough to be protective. In a sense this is just another twist on the "survival of the fittest" process in #EVOLUTION. Burnet in Australia and Talmage in CO hypothesized:
That antibodies SIT ON THE SURFACE of lymphocytes and
That each lymphocyte manufactures only a SINGLE ANTIBODY (which recognizes and binds to only a SINGLE EPITOPE).

This theory, which has come to be called the CLONAL SELECTION THEORY, has been shown to be correct.

If you take the time to understand the following information and the Figs. 5-8, understanding the immune system is relatively easy & you'll be able to figure out most of the answers to exam questions on this material.

THE CURRENT THEORY OF ANTIBODY FORMATION:

  1. During fetal development the body randomly produces millions of B & T CELLS, each of which produces only a SINGLE EPITOPE BINDING ANTIBODY.

 2. The B cells that produce self antibodies (antibodies against self antigens) are DESTROYED, leaving only lines or CLONES of B cells that produce random antibodies to foreign epitopes.

 3.When a particular foreign epitope (e.g. antigen No. 2,025) is introduced into the host's body it is PROCESSED by lymphocytic cells of the nonspecific defense system. This sets off a sequential series (cascade) of events that eventually acts on a small population of randomly-produced B/T cells that happen (by chance) to have on their surface, antibody (No. 2,025) which binds to ANTIGEN No. 2,025.

 4. These events trigger a RAPID PROLIFERATION of that PARTICULAR B (and T-cell) cell population (No. 2,025), producing a large number of clones. These No. 2,025 B cell-clones differentiate into PLASMA CELLS (Fig. 3) which are ANTIBODY-PRODUCING-FACTORIES that spew out prodigious quantities of ONE ANTIBODY-#2,025, that binds to the specific antigen-epitope No. 2,025 that stimulated it.

 5. The specific antibody floods through the host and wherever it binds to its epitope it MARKS IT FOR ATTACK and destruction by the appropriate cells and associated components of the immune system (complement and PMNs etc.).

Clonal selection(13947 bytes)
Figure 5. The process of B & T cell differentiation and CLONAL SELECTION. The parental STEM cells migrate to the bone marrow and to the thymus gland where they differentiate into B and T cells which make random epitope binding proteins. When a foreign epitope binds to the appropriate site on the B & T cells, they replicate into clones that, in the case of the B cells differentiate into PLASMA cells that produce prodigious quantities of specific antibodies. The T cell clones further differentiate into several different T cell types with specific functions.

 

Remembered Response (2524 bytes)
Figure 6. The response to an antigen (Ag) in terms of specific antibody production over time.
Initially the levels of each unique antibody are extremely low, however as soon as the stimulation events occur (Fig. 5) and the plasma cell clone begins producing antibodies the TITER (concentration or quantity/volume) of a unique antibody begins to rise. It takes about 2 weeks for the Ab level to peak. Once the foreign antigen is removed, antibody production slowly returns to a low level, however MEMORY PLASMA CELLS remain in the system. When the original antigen again appears in the host these memory cells respond rapidly and produce even higher levels of antibodies. This "REMEMBERING RESPONSE" is why we remain immune to many diseases for a long time. The secondary exposure to the antigen may be natural or it may be artificial in the case of BOOSTER vaccinations. As parents we are responsible for seeing to it that our children are initially vaccinated and that their booster shots are given at the appropriate ages.

ANTIBODY STRUCTURE AND VARIABILITY

So at this point we know that there are millions of B-cell-antibody-producing types, just waiting to be "triggered" by contact with their respective antigen, but we still don't know how we get these millions of different B-cells in the first place. To understand how this occurs you have to know something about antibody structure.


Figure 7. The IgG molecule. IgG is composed of two protein subunits, a LIGHT (blue) and a HEAVY CHAIN (orange) named according to their relative sizes. The various chains are bonded together to form the IgG molecule with disulfide bonds (S-S bonds). Molecular antibody model; note the two arms & the heavy 'n light chains.

There are five different types of antibodies, however in this course we will discuss only the most common one, IgG, in detail.

 However, note that the other 4 types physically resemble the basic structure of IgG (requires Chime). IgG does most of the humoral immune work. Figure 7 shows the physical structure of the IgG molecule. This site shows mobile models of IgG (requires Chime)

The Y-shaped structure is real as electron microscopic pictures show. However, even before they viewed IgG in an electron microscope immunologist had discerned its basic shape. They knew that each antibody had to have two equivalent binding sites for its specific epitope. It turns out that those two binding sites are located at the end of the short arms of the Y (Fig. 10).

The IgG molecule is further divided into CONSTANT and VARIABLE REGIONS OR DOMAINS. The constant regions have mostly the SAME amino acid sequence in all IgG molecules (we won't discuss the differences here), whereas the amino acid sequences in the variable regions are DIFFERENT for each unique antibody produced by a clone of plasma cells. The amino acid sequence in the variable domains are such that they tightly bind to particular epitopes. Thus they show the same LOCK-KEY relationship as do enzymes/substrates and enzymes/allosteric molecules and viruses/target cell receptors.

imm52.gif (7255 bytes)
Figure 8A. Three unique antibody IgG molecules. The base of the "Y" and part of each arms are called the CONSTANT REGIONS because their amino acid sequence tends to be very similar in all IgG molecules. The variable regions are at the end of the arms and their amino acid sequence is very different for each IgG molecule. These variable regions fold so as to bind to specific epitopes or antigens; the unique binding sites are shown in their respective three variable regions on the right.

imm54.gif (5260 bytes)Figure 8B. Random Ab formation. Each of the colored squares in the light chain (L.C.) and heavy chain (H.C.) regions represent a GENE FRAGMENT. If three of these fragments are required to make one gene for the VARIABLE REGION a large number of combinations are possible, some of which are shown below each cluster of fragments. Then on the far left are several examples of combinations between the variable light and heavy chain genes that form the variable arms of IgG. As you can see from the limited numbers of color bars used in the illustration many different combinations could be formed.

It may help you to understand Fig. 11 if you think of each of the L.C. and H.C. colored rectangles as different cards and then each of the light and heavy chain combinations of 3 cards each as "HANDS" of cards dealt to the players.

Click here to see a series of views of antibody molecules.

ANTIBODY VARIABILITY

Antibody variability comes about through an unusual SHUFFLING of the genes that code for the variable portions of the IgG molecule (Fig. 11). The antibody genes are inherited as GENE FRAGMENTS. During lymphocyte development these gene fragments are joined together in RANDOM ARRANGEMENTS that form the COMPLETE GENES in the individual B & T cells. The fact that the IgG molecules are composed of two proteins, each with its independently produced variable regions adds increased variability to the whole process. It is estimated that >100 million distinct antibodies can be made by this process. In addition the genes for receptors of B lymphocytes MUTATE extremely rapidly when the B cell is activated by binding to a foreign substance or antigen. Once a B lymphocyte binds antigen to its receptor, it differentiates and secretes specific antibody molecules that have been specified by the genes that created the receptor on the parent B cell.

 

TYPES OF ANTIBODY (Ab) REACTIONS

The basic reaction of all Ab's with their epitopes is the same (a binding of ligand and receptor), but the physical MANIFESTATIONS of that reaction differs depending on the PHYSICAL NATURE of the antigen. The point to remember is that the Ab has TWO binding sites so a single Ab molecule can bind to two independent antigen molecules or particles.

NEUTRALIZATION = When the antigen is a soluble toxin, the addition of an Ab against it will usually render the toxin INEFFECTIVE (nontoxic), that is it NEUTRALIZES it. Such neutralized toxins are called TOXOIDS and can be used as vaccines. For example, if you were suspected of suffering from either tetanus or botulism poisoning the treatment would involve giving you a shot of the appropriate antitoxin, which is a common name for the Ab against a toxin. The antitoxin circulates through your body and binds and neutralizes any toxin it contacts.
PRECIPITATION = Under the proper conditions a soluble antigen can be precipitated in the presence of its Ab because of the antigen-antibody net-work that forms gets large enough to form masses that SETTLE OUT (precipitate) on their own.
AGGLUTINATION = When the antigen is a large PARTICLE, like a whole bacterium or a RBC, the addition of its Ab will form an Ab-antigen net work that causes the particles to CLUMP IN LARGE MASSES like milk coagulating when it spoils. This agglutination is easy to see and is useful for diagnostic purposes. For example, if you want to see if a person is making Ab against a particular bacterium, mix the person's serum with the suspected bacterium; if the bacteria clump into large globs it means that Ab are present. Both precipitation and agglutination are illustrated below

T-CELL IMMUNITY

The second component of the adaptive immunity system involves a set of special immune cells called T cells. We will only deal with three of the T cell types. The T cells develop in the thymus gland (Fig. 7), but the process is not completely understood. Briefly, the stem cells in the thymus undergo differentiation's that form two major groups of T cells, the KILLER T CELLS (Tc or Tk) and the HELPER T CELLS (Th). The process of immunological diversification through DNA fragment shuffling is the same as that which was described for the B cell development so that EACH Tk and Th cell responds only to a unique epitope (Fig. 3). T cells that react with self antigens DIE OFF during the early stages of differentiation. The T cell clones migrate throughout the lymphatic system. When a T cell encounters its antigen (epitope) it goes through a series of changes that convert it into its final immunological defense posture.

THE SPECIAL ROLE OF THE T-HELPER (Th) CELL

The special role of the T-helper (Th-cell) in developing immunology is described below:

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  1. A macrophage engulfs a virus or bacteria & breaks down their proteins. Antigenic fragments of these proteins are presented on the surface of the macrophage.
  2. The few Th-cells, which contain receptors on their surface that recognizes a particular presented foreign antigen, INTERACTS WITH that unique-foreign antigen. This interaction triggers a series of events that ACTIVATES the Th-cell.
  3. The activated Th-cells are stimulated to proliferate, producing a population of this class of Th-cells (clonal selection). The population of activated Th-cells interact physically (via ligand/receptor interactions) with only those rare B-cells that make antibody that recognizes the SAME antigen molecules that have activated the Th-cell. During this interaction the Th- & B-cells recognize each other by their common recognition of the unique antigen. The B-cells do not require the macrophage-processed antigen as they react with the whole antigen molecule (e.g. the virus, bacteria, pollen etc.)
    101ThwithBcell16.gif (3202 bytes)
  4. The B- and Th-cell interaction stimulates the Th-cells to produce chemicals (CYTOKINES) that, in turn, stimulate the appropriate B-cells to proliferate (clonal selection) and to DIFFERENTIATE into Ab-producing plasma cells that produce the Ab that bind the antigen that the Th-cell originally reacted to.

 

 

 

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Therefore, the Th helper cell acts as a MASTER CONTROL CELL of the immune system. It is REQUIRED  for both the humoral and cellular immune systems to function. When Th cells are not present the host's fate is sealed because the correct B-cells will not proliferate and the correct antibody will not be produced (like a football team without a quarterback) with the result that death ensues. (See discussion on AIDS)

 

 

 

 

THE FUNCTION OF T-KILLER (Tc) CELLS.

The T killer cells (Tc) have a different function. The Tc cells are designed to recognize foreign antigens on the SURFACE OF HOST CELLS. Foreign cell epitopes appear on host cells mainly in two types of situations, in viral infection and in cancer cells. In both these case there are changes in the composition of the host's cells that cause foreign antigens to be PRESENTED ON THE SURFACE of the modified cell. The Tc cells recognize these foreign epitopes and are stimulated to attack and destroy the infected or modified (e.g. cancer) cell.


Figure 10. Activation of & killing by Tc killer cells of cells displaying a unique surface antigen. Note the virus particles in the cell on the right and the presence of unique viral proteins on its surface to which the Tc cells bind.

Other T cell types exist and probably more types will be found. The above is an incomplete and simplified explanation of what is currently known about the immune system. Some of it will undoubtedly be modified as new facts come to light and we will surely find that it is even more complex and subtle than previously imagined. It's like human relationships which usually start out simple, but they become more complex as time goes on.

AUTOIMMUNE DISEASE AND ALLERGIES

The adaptive immune system can, on occasion, make antibodies against the body's own cells. These antibodies activate complement which damages or destroys the targeted self-cells. When this happens you have an AUTOIMMUNE disease. Examples of autoimmune diseases include multiple sclerosis, juvenile diabetes, myasthenia gravis, Graves disease and rheumatoid arthritis. Autoimmune diseases are as insidious and terrible as cancer as they represent the BETRAYAL OF THE BODY by something that is intended to be of benefit to the body. Five percent of adults in Europe and North America, 2/3 of them women, suffer from autoimmune disease and this is likely to be a low estimate.

Since you've been paying attention, you should suspect by now that autoimmune disease is complex. In many autoimmune illnesses, genetic factors play a crucial role. For example, identical twins have a high chance of suffering from the same autoimmune disease. The causes of autoimmune diseases are virtually unknown, but the human genome is sequenced we will begin to learn about the genetics of these diseases. A significant amount of data indicates that infections can trigger them (e.g. Strep-throat/rheumatoid arthritis), or they can be provoked simply by an injury or stress. There are some hopeful signs of treatment for some of these autoimmune disease, but much more needs to be learned about them.

ALLERGIES

Allergies and their more dangerous relative, hypersensitivity's, are very common. Basically they can be seen as OVER REACTIONS to foreign antigens by a HYPERACTIVE or misdirected specific immune system. These conditions include allergic rhinitis (hay fever), asthma, sneezing or fighting for air after inhaling certain chemicals. Asthma is a serious disease and a frequent cause of death of young adults; I have lost three friends, all under 40, in my life time to asthma and I have several relatives who suffer from this dreadful condition. The antigens that trigger allergy attacks are called ALLERGENS. We don't understand why allergies are so common, but one theory is that they are the results of our immune system evolving a way of dealing with parasites (worms, etc.).When the body is invaded by a parasite it responds by producing IgE, a form of antibody different from IgG. IgE is the antibody that is responsible for allergy reactions. The stages of an allergic reaction are:

An initial exposure of the immune system to an ALLERGEN. At this time there are NO SYMPTOMS as the immune system must first synthesize the IgE in response to the unique allergen.

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Figure 11. Allergic response
. A MAST cell coated with specific IgE antibody to an allergen reacts with the allergen, triggering the rapid release of the "chemical containing granules" within the MAST cell. These granules burst and release these potent chemicals which bring on the allergy attack.

On subsequent exposures to the allergen, it binds to IgE molecules that are located on the surface of MAST CELLS.

This induces a CASCADE (series) of events that cause the mast cells to release chemicals present in granules in the mast cells.

These chemicals include histamines, leukotrienes and prostaglandins, which in turn INDUCE THE VARIOUS SYMPTOMS typical of an allergic response.

This entire process can take JUST SECONDS, thus explaining the suddenness with which allergic and hypersensitive reactions can occur. Allergies include a WIDE VARIETY of diseases. For example chronic allergic rhinitis (runny nose, stuffed up sinuses) is commonly caused by the feces of the COMMON HOUSE LOUSE, to CAT & DOG allergens & to the COMMON COCKROACH all of which live in most of our homes. Seasonal allergies are often caused by pollens or mold spores in the air. Asthma effects approximately 5 to 10% of children, but another 5 to 10% acquire asthma in adulthood and others become afflicted in their 80s. There are numerous forms of asthma, only some of which may involve IgE-mediated activity. For recent (8/99) information on asthma and allergies visit this site.

Mast cells have recently been shown to have an important role in the bodies early defense against many pathogens. Mast cells serve as an early warning system at the body's borders that's equipped to kill some of the invading bacteria. Its main role is to alert the heavy artillery of the immune system that the body is under attack. An understanding of this role may allow mast cells to be manipulated so as to produce a more effective immune system.

ANAPHYLAXIS

BOTTOM WAR: After the end of the second world war some American service men in Japan suffered from painful and itchy blisters developing on their elbows and in a ring around their buns. Was this a subtle form of chemical warfare developed by the Japanese as retaliation for losing? No, it turned out that a common Japanese wood used to make toilet seats and bar tables contains a chemical that was very similar to poison ivy allergen and the Americans were reacting to it because of their exposure to poison ivy in the US. I suspect that few service men gave up the activities that brought them into contact with this allergen!

One of the more dangerous allergic reactions is ANAPHYLAXIS. This frightening response to an allergen can KILL AN INDIVIDUAL in a few minutes. Typically, it occurs following an INSECT STING or the ingestion of a tiny bit of food (e.g. peanut butter). It is characterized by the allergen inducing an EXPLOSIVE RELEASE of chemicals from the MAST CELLS. The rush of these chemicals can induce shock which quickly leads to death. In some cases rapid swelling can close off the trachea causing the victim to suffocate. Less dangerous responses, often to foods, result in symptoms like hives or a transient swelling in the face or area effected. The danger with food anaphylaxis is that small quantities added in with the major food can induce this response. If you've even had even a mild response to a food or an insect bite, you are always in DANGER as the next one could kill you. Sensitive people should see an allergist and be tested. People who are in danger from anaphylactic reactions should carry kits with them containing drugs that they can inject quickly into themselves to stop the reaction.

There are many myths and much misunderstanding about allergies. Profuse sums of money are spent on testing for allergies and for allergy treatments, but RIGOROUS PROOF is often lacking both for the cause of specific allergies or for the efficacy of the, usually expensive, treatments. The role of industrial pollutants in producing allergies is not clear, but considerable data suggests a relationship between air quality, asthma and other respiratory difficulties. Substantial work remains to be done before this relationship is resolved. There are treatments for eliminating the sensitivity to specific allergens, but they generally required a lifetime commitment to the treatment. Before embarking on a long series of expensive, sometimes painful injections to treat your allergies, it is a good idea to get a second opinion and to explore alternative treatments. For example, three of the most common causes of household allergies are the feces of a louse that lives in all our homes, cat and/or dog proteins (flakes of skin and the hair; even from the neighbors' pets) & cockroach proteins (feces). The following simple treatments may help an allergy problem:
Vacuum your home frequently using special (costly) bags that TRAP the LOUSE FECES, THE HAIR AND SKIN FLAKES OF PETS and COCKROACH BITS; but cleaning them up completely may be a problem.
Wash the bedding frequently, as bedding is often infested with the house louse.
Remove things like rugs, bookcases and pictures that collect dust.
Installing an air purification and filtration system.
Wearing protective particle masks when engaging in activities that are likely to expose you to allergens (e.g. cleaning the house, cutting the grass, cleaning out the garage).
Change clothes/bath immediately after such activities, to prevent allergy attacks. This is another case of MOMMIE being right when she told you to "clean yourself and your room".
Stay inside when the pollen and mold count it high.

MISCELLANEOUS IMMUNOLOGICAL SITUATIONS

CANCER TREATMENT

The immune response is being used as a possible treatment against cancer. As described above, the Tc cells destroy cells that present nonself epitopes on their cell surface. This includes cancer cells. Some data suggests that many cancers arise throughout our lives but that they are routinely destroyed by the immune system. However, for unknown reasons it doesn't get all of them. There is evidence suggesting that if we could "turn on" the immune system properly it would destroy many cancers that escape destruction initially. Such experiments against the skin cancer melanoma are currently underway and we can only hope they will succeed.

THE Rh FACTOR PROBLEM

The Rh factor is a concern to all pregnant women as it can result in the death or damage to a newly born infant. What happens is as follows:
There is a protein in red blood cells called the Rh-factor. Most of us have this factor, and we are said to be Rh+.
Those that lack this protein are Rh-.
The problem comes about when a woman who is Rh- bears an Rh+ baby. Generally there is no problem with the FIRST BABY, because the mother is not exposed to the Rh+ blood UNTIL BIRTH. However, at that time she may produce antibodies against the Rh protein as it is a foreign antigen to her immune system.
The problem comes when the woman bears other Rh+ children.
Under these conditions Rh antibodies many enter the babies blood, usually near birth, and attack the baby's RBC causing them to lyse. The lack of oxygen-carrying RBC can damage the baby's brain or even result in death. If such a condition is expected the baby's blood can be replaced immediately after birth (or even in utero) and before damage is done.
Today the mother can be desensitized to the Rh antigen and prevented from producing Rh antibodies.

GENETIC INABILITY TO PRODUCE A FUNCTIONING IMMUNE SYSTEM

Some children are born lacking the ability to make a functioning immune system. Without treatment these children are doomed to an EARLY DEATH. Some of the genes responsible for this deficiency have been identified and their defect known. Currently GENE THERAPY is underway to replace the missing genes with a functioning healthy gene. Although the experiment is far from being finished, the early results, although mixed are encouraging and several children are living normal lives today who would have surely died without this treatment. Of concern, however is the HIGH cost entailed to treat these children. These costs are generally borne by the TAXPAYER. The hope is that the experiments on these children (and on others with genetic diseases) will result in a treatment for this, and other, inherited diseases that can be applied at an acceptable cost.

FORENSIC IMMUNOLOGY

Immunological testing is important in criminal and other legal circumstances, such as proving parenthood. Sensitive immunological tests along with techniques like DNA fingerprinting and related techniques provide added sensitivity and specificity to both disease and forensic diagnosis. Techniques are being developed to combine the two which will improve sensitivity even more.

ADDITIONAL READINGS ON IMMUNOLOGY ON THE INTERNET

If you are having trouble understanding my explanations give these sources at try:

This site contains a fantastic tutorial using Chime on antibody structure and Ab/Ag interaction. The best presentation I've seen so far of antigen/antibody reactions. Must load the following: RasMol, Chime and Shockwave. When on the INDEX page scroll click on the "Protein Domains". It may take a while to load (I've had trouble here). View the series of slides illustrating the structure of antibodies. Use the right mouse button to see different views of the molecules and the left button to rotate the molecules. If you study this material you will know than I do about antibodies.

Another Lec on immunology.

Collection of antibody images.

Still another course on the immune system. Very good images and cartoons. Start with Chap. 6.

Even another course on the immune system.

Copyright © Dr. R. E. Hurlbert, 1999.
This material may be used for educational purposes only and may not be duplicated for commercial purposes.

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