Molecular and cellular biology Tools

1. The link for the molecular biology site

Essential Tools and Resources for Molecular Biology and Biochemistry on the Internet
The Current Protocol for Molecular Biology on the Tokyo University (Japanese)

2 Quick Access Table for the Molecular Biology.

WAIS

DISC

KW [Key Words Search]

SFgate

DDBJ

KW

ID [ID Search]

getentry

DDBJ

KW

PubMed

NCBI

Entrez

NCBI

KW, ID

BLAST

BLASTN, BLASTP, BLASTX, TBLASTN

GenomeNET

FASTA, TFASTA

FASTA

GenomeNET

Smith-Waterman

[E-mail Service]

DISC

DNA to AA

Translation - The Protein Machine

EBI

PROSCAN

Predicts Promoter Regions (putative eukaryotic Pol II promoter sequences)

NIH

Signal Scan

NIH

Find and list homologies of signal sequences

Splice Site Prediction by Neural Network

SSPN

LBNL

Prediction of Exon/Promoter/ORF etc.

Gene Feature

BCM

Graphical analysis tool which finds all ORFs

ORF Finder

NCBI

Searching Transcription Factor Binding Sites

TFSEARCH

GenomeNET

Searching Protein Sequence Motifs

MOTIF

GenomeNET

Protein Motif Search

BLOCK

HFCRC

MEME

Multiple EM for Motif Elicitation

Pasteur

ClustalW

Multiple Sequence Alignment

GenomeNET

pI/Mw

ExPASy

Computation of the Theoretical pI and Mw

WWWtacg

Restriction Enzyme Mapping and Analysis

UC Irvine

Restriction Enzyme Mapping and Analysis

WebCutter

Max Heiman

Primer selection

Primer Design for PCR

VGC

Primer3

Primer Design for PCR

MIT

Web Primer

Primer Design for PCR and Sequencing

SGD

Prediction of Tm

Tm

VGC

2nd structure prediction

Protein Secondary Structure Prediction

BCM

PredictProtein

EMBL

PHDsec, PHDacc, PHDhtm, PHDtopology, PHDthreader, MaxHom, EvalSec

BOXSHADE

Pretty Printing and Shading of Multiple-Alignmen

ISREC

ReadSeq

Sequence Format Exchange

NIH-J

Codon Usage

Codon Usage Tabulated from GenBank

DISC

Searching SwissProt or EMBL by protein mass after digestion

MassSearch

CBRG

Analysis and Prediction of Protein Sorting Signals Coded in Amino Acid Sequence

PSORT

NIBB

PROTFAM

Protein Classification

MIPS

Predict Transmembrane Helices and Topology of Protein

HMMTOP

Institute of Enzymology

GenomeNet
DNA Data Bank of Japan

An Automated Comparative Protein Modelling

Tree drawing software for Apple Macintosh and Windows

Sites for the Molecular Biology - LINKS

Molecular Biology Supplier

PLANT PHYSIOLOGY

American Society for Microbiology

Idealibrary Search

Cyanobase

Pro.Natl.Acad.Sci

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