| ROUND ONE 1. Cardinals - Jesse Foppert 2. Rangers - Alfredo Amazaga 3. Rangers - Seung Song 4. Rockies - Kenny Baugh 5. Athletics - Mike Fontenot 6. Blue Jays - Jake Peavy 7. Athletics - Jose Reyes 8. White Sox - Wilken Ruin 9. Texas - Chin Feng Chin 10. Phillies - Bobby Bradley 11. Blue Jays - Justin Wayne 12. Braves - Josh Gridley 13. Indians - Joe Thurston 14. Cardinals - Brandon Phillips 15. Astros - Keith Reed 16. Yankees - Ben Diggins 17. Athletics - Brad Hennessey 18. Mariners - Donnie Bridges |
| Draft: Minors |
| ROUND TWO 19. Rangers - Mike Rivera 20. Reds - Robert Stratton 21. Rangers - Tyler Walker 22. Rockies - Jason Hill 23. Marlins - Mark Phillips 24. Blue Jays - Tony Torcata 25. Blue Jays - Joe Torres 26. White Sox - Vince Faison 27. Blue Jays - Tony Blanco 28. Phillies - Francisco Rodriguez 29. Florida - Matt White 30. Braves - Brad Baker 31. Indians - Omar Infante 32. Cardinals - Cristian Guerrero 33. Astros - Tripper Johnson 34. Mariners - Darnell McDonald 35. Athletics - Ed Rogers 36. Mariners - Juan Pena |
| ROUND THREE 37. Athletics - Abraham Nunez 38. Reds - Rafael Roque 39. Rangers-no pick 40. Rockies - Blaine Neal 41. Athletics - Michael Restovich 42. Blue Jays - Pable Ozuna 43. Blue Jays - Jason Standridge 44. White Sox-no pick 45. White Sox-no pick 46. Phillies - Matt Wheatland 47. Athletics - Wes Anderson 48. Braves-no pick 49. Indians - Carlos Valderrama 50. Cardinals - Matt Riley 51. Astros - Richard Stahl 52. Yankees -no pick 53. Royals-no pick 54. Mariners-no pick |
| ROUND FOUR 55. Athletics - Miguel Cabrera 56. Reds - Michael Woods 57. Athletics - Matt Kinney 58. Rockies - Jeff Guiel 59. Athletics - J.J. Davis 60. Blue Jays - Mike Bynum 61. Athletics - Ntema Ndungidi 62. White Sox-no pick 63. Twins-no pick 64. Phillies - Adam Pettyjohn 65. Royals-no pick 66. Braves-no pick 67. Indians - Mike Gonzalez 68. Cardinals - Rocco Baldelli 69. Astros - Chip Ambres 70. Yankees -no pick 71. Athletics - Scott Hodges 72. Mariners-no pick |