| ROUND | PICK | OVERALL | CURRENT | ROUND 1 | TEAM | POS | ORIGINAL |
| 1 | 1 | 1 | MIB | TEIXEIRA, MARK CHARLES | TEXA | 1B | BHL |
| 1 | 2 | 2 | SO | CABRERA, JOSE MIGUEL (TORRES) | FLAN | OF | SO |
| 1 | 3 | 3 | MM | REYES, JOSE BERNABE | NY N | SS | BP |
| 1 | 4 | 4 | KF | MARTINEZ, VICTOR JESUS | CLEA | C | KF |
| 1 | 5 | 5 | MM | WEBB, BRANDON T | ARIN | ST | AT |
| 1 | 6 | 6 | KF | BALDELLI, ROCCO DANIEL | TB A | OF | MIB |
| 1 | 7 | 7 | BCP | WILLIAMS, JEROME LEE | SF N | ST | BCP |
| 1 | 8 | 8 | CC | YOUNG, DMITRI DELL | DETA | OF | CC |
| 1 | 9 | 9 | BG | CONTRERAS, JOSE A | NY A | RE | BG |
| 1 | 10 | 10 | MP | HARDEN, JAMES RICHARD "RICH" | OAKA | ST | MP |
| 1 | 11 | 11 | IFD | BAY, JASON RAYMOND | PITN | OF | IFD |
| 1 | 12 | 12 | CC | WILLIS, DONTRELLE WAYNE | FLAN | ST | GIT |
| 1 | 13 | 13 | CC | RAMIREZ, HORACIO | ATLN | ST | LA |
| 1 | 14 | 14 | AP | MECHE, GILBERT ALLEN "GIL" | SEAA | ST | AP |
| 1 | 15 | 15 | KF | BONDERMAN, JEREMY ALLEN | DETA | ST | CK |
| 1 | 16 | 16 | BB | HAFNER, TRAVIS LEE | CLEA | 1B | LVP |
| 1 | 17 | 17 | BHL | DAVIS, JASON T | CLEA | ST | BB |
| 1 | 18 | 18 | MM | MATSUI, HIDEKI | NY A | OF | MM |
| ROUND | PICK | OVERALL | CURRENT | ROUND 2 | TEAM | POS | ORIGINAL |
| 2 | 1 | 19 | MIB | LEE, CLIFTON PHIFER "CLIFF" | CLEA | ST | BHL |
| 2 | 2 | 20 | SO | GONZALEZ, JEREMIS SEGUNDO (ACO | TB A | ST | SO |
| 2 | 3 | 21 | BP | GUILLEN, JOSE MANUEL | OAKA | OF | BP |
| 2 | 4 | 22 | KF | GOBBLE, BILLY JAMES "JIMMY" | KC A | ST | KF |
| 2 | 5 | 23 | AT | SEO, JAE WEONG | NY N | ST | AT |
| 2 | 6 | 24 | IFD | REDMAN, JULIAN JAWONN "TIKE" | PITN | OF | MIB |
| 2 | 7 | 25 | BCP | GERUT, JOSEPH D "JODY" | CLEA | OF | BCP |
| 2 | 8 | 26 | CC | PODSEDNIK, SCOTT ERIC | MILN | OF | CC |
| 2 | 9 | 27 | AT | GONZALEZ, ALEXANDER "ALEX" | FLAN | SS | BG |
| 2 | 10 | 28 | MP | PHILLIPS, JASON LLOYD | NY N | 1B | MP |
| 2 | 11 | 29 | IFD | MATOS, LUIS DAVID | BALA | OF | IFD |
| 2 | 12 | 30 | CK | VILLARREAL, OSCAR EDUARDO | ARIN | RE | GIT |
| 2 | 13 | 31 | CC | ROBERTSON, JERIOME PAUL | HOUN | ST | LA |
| 2 | 14 | 32 | AP | GREENE, KHALIL THABIT | SD N | SS | AP |
| 2 | 15 | 33 | MM | VALVERDE, JOSE RAFAEL | ARIN | RE | CK |
| 2 | 16 | 34 | LVP | MORNEAU, JUSTIN ERNEST GEORGE | MINA | 1B | LVP |
| 2 | 17 | 35 | BB | VARGAS, CLAUDIO (ALMONTE) | MONN | ST | BB |
| 2 | 18 | 36 | AT | HAMMOCK, ROBERT WADE "ROB" | ARIN | C | MM |
| ROUND | PICK | OVERALL | CURRENT | ROUND 3 | TEAM | POS | ORIGINAL |
| 3 | 1 | 37 | LA | CORMIER, RHEAL PAUL | PHIN | RE | BHL |
| 3 | 2 | 38 | SO | MATEO, JULIO CESAR | SEAA | RE | SO |
| 3 | 3 | 39 | BP | AYALA, LUIS IGNACIO | MONN | RE | BP |
| 3 | 4 | 40 | KF | TSAO, CHIN-HUI | COLN | ST | KF |
| 3 | 5 | 41 | AT | CHACON, SHAWN A | COLN | ST | AT |
| 3 | 6 | 42 | MIB | UTLEY, CHASE CAMERON | PHIN | 2B | MIB |
| 3 | 7 | 43 | BCP | ALVAREZ, WILSON EDUARDO | LA N | RE | BCP |
| 3 | 8 | 44 | CC | MAC DOUGAL, ROBERT MICHAEL "MI | KC A | RE | CC |
| 3 | 9 | 45 | BG | KERSHNER, JASON ASHLEY | TORA | RE | BG |
| 3 | 10 | 46 | MP | BIGBIE, LARRY R | BALA | OF | MP |
| 3 | 11 | 47 | KF | WESTBROOK, JACOB CAUTHEN "JAKE | CLEA | RE | IFD |
| 3 | 12 | 48 | LA | KOLB, DANIEL LEE "DANNY" | MILN | RE | GIT |
| 3 | 13 | 49 | CC | LIDGE, BRADLEY THOMAS "BRAD" | HOUN | RE | LA |
| 3 | 14 | 50 | SO | LOPEZ, JAVIER ALFONSO | COLN | RE | AP |
| 3 | 15 | 51 | KF | ATKINS, GARRETT BERNARD | COLN | 3B | CK |
| 3 | 16 | 52 | LA | DU BOSE, ERIC LADELL | BALA | RE | LVP |
| 3 | 17 | 53 | BB | NIX, LAYNCE M | TEXA | OF | BB |
| 3 | 18 | 54 | BCP | NATHAN, JOSEPH MICHAEL "JOE" | SF N | RE | MM |
| ROUND | PICK | OVERALL | CURRENT | ROUND 4 | TEAM | POS | ORIGINAL |
| 4 | 1 | 55 | SO | OVERBAY, LYLE STEFAN | ARIN | 1B | BHL |
| 4 | 2 | 56 | SO | HARPER, TRAVIS BOYD | TB A | RE | SO |
| 4 | 3 | 57 | BP | MICELI, DANIEL "DANNY" | HOUN | RE | BP |
| 4 | 4 | 58 | GIT | HARVEY, KENNETH EUGENE "KEN" | KC A | 1B | KF |
| 4 | 5 | 59 | AT | LINEBRINK, SCOTT CAMERON | SD N | RE | AT |
| 4 | 6 | 60 | MP | LOPEZ, AQUILINO (ROA) | TORA | RE | MIB |
| 4 | 7 | 61 | BCP | CABRERA, JOLBERT ALEXIS | LA N | OF | BCP |
| 4 | 8 | 62 | CC | CASTRO, JUAN GABRIEL | CINN | 2B | CC |
| 4 | 9 | 63 | BG | NADY, XAVIER C | SD N | OF | BG |
| 4 | 10 | 64 | MP | FIGGINS, DESMOND DE CHONE "CHO | ANAA | OF | MP |
| 4 | 11 | 65 | BB | HEILMAN, AARON MICHAEL | NY N | ST | IFD |
| 4 | 12 | 66 | BCP | ROSS, DAVID WADE "DAVE" | LA N | C | GIT |
| 4 | 13 | 67 | LA | HART, BODHI J "BO" | STLN | 2B | LA |
| 4 | 14 | 68 | BP | JOHNSON, REED CAMERON | TORA | OF | AP |
| 4 | 15 | 69 | GIT | CORREIA, KEVIN JOHN | SF N | RE | CK |
| 4 | 16 | 70 | MIB | BRAZELTON, DEWON C | TB A | ST | LVP |
| 4 | 17 | 71 | KF | PHILLIPS, BRANDON EMIL | CLEA | 2B | BB |
| 4 | 18 | 72 | MM | PATTERSON, JOHN HOLLIS | ARIN | RE | MM |
| ROUND | PICK | OVERALL | CURRENT | ROUND 5 | TEAM | POS | ORIGINAL |
| 5 | 1 | 73 | BB | SANCHEZ, FREDERICK P "FREDDY" | BOSA | 3B | BHL |
| 5 | 2 | 74 | SO | LEWIS, COLBY P | TEXA | ST | SO |
| 5 | 3 | 75 | BP | BAERGA, CARLOS OBED | ARIN | 1B | BP |
| 5 | 4 | 76 | LA | FORD, JON LEWIS "LEW" | MINA | OF | KF |
| 5 | 5 | 77 | AT | SHOUSE, BRIAN DOUGLAS | TEXA | RE | AT |
| 5 | 6 | 78 | KF | BALFOUR, GRANT ROBERT | MINA | RE | MIB |
| 5 | 7 | 79 | BCP | MONROE, CRAIG KEYSTONE | DETA | OF | BCP |
| 5 | 8 | 80 | CC | TAVAREZ, JULIAN | PITN | RE | CC |
| 5 | 9 | 81 | BG | KATA, MATTHEW JOHN "MATT" | ARIN | 2B | BG |
| 5 | 10 | 82 | MP | TOWERS, JOSHUA ERIC "JOSH" | TORA | RE | MP |
| 5 | 11 | 83 | IFD | RAMIREZ, ERASMO | TEXA | RE | IFD |
| 5 | 12 | 84 | LVP | LESKANIC, CURTIS JOHN "CURT" | KC A | RE | GIT |
| 5 | 13 | 85 | LA | MERCKER, KENT FRANKLIN | ATLN | RE | LA |
| 5 | 14 | 86 | AP | TRABER, WILLIAM HENRY "BILLY" | CLEA | RE | AP |
| 5 | 15 | 87 | BP | WENDELL, STEVEN JOHN "TURK" | PHIN | RE | CK |
| 5 | 16 | 88 | BHL | PENA, WILY MODESTO | CINN | OF | LVP |
| 5 | 17 | 89 | CC | VILLONE, RONALD THOMAS "RON" | HOUN | ST | BB |
| 5 | 18 | 90 | MM | FREEL, RYAN PAUL | CINN | OF | MM |
| ROUND | PICK | OVERALL | CURRENT | ROUND 6 | TEAM | POS | ORIGINAL |
| 6 | 1 | 91 | IFD | CRESSEND, JOHN BAPTISTE "JACK" | CLEA | RE | BHL |
| 6 | 2 | 92 | SO | PERALTA, JHONNY A "JOHN" | CLEA | SS | SO |
| 6 | 3 | 93 | KF | FOPPERT, JESSE WILLIAM | SF N | ST | BP |
| 6 | 4 | 94 | LA | EVERETT, JEFFREY ADAM "ADAM" | HOUN | SS | KF |
| 6 | 5 | 95 | AT | MARTIN, THOMAS EDGAR "TOM" | LA N | RE | AT |
| 6 | 6 | 96 | MIB | HODGES, TREY ALAN | ATLN | RE | MIB |
| 6 | 7 | 97 | BCP | GOOD, ANDREW RICHARD | ARIN | RE | BCP |
| 6 | 8 | 98 | CC | OLIVER, DARREN CHRISTOPHER | COLN | ST | CC |
| 6 | 9 | 99 | BG | BECK, RODNEY ROY "ROD" | SD N | RE | BG |
| 6 | 10 | 100 | MP | BLAKE, WILLIAM CASEY "CASEY" | CLEA | 3B | MP |
| 6 | 11 | 101 | IFD | BETANCOURT, RAFAEL JOSE | CLEA | RE | IFD |
| 6 | 12 | 102 | LA | MELHUSE, ADAM MICHAEL | OAKA | C | GIT |
| 6 | 13 | 103 | LA | CLARK, HOWARD RODDY "HOWIE" | TORA | 3B | LA |
| 6 | 14 | 104 | AP | CARTER, LANCE DAVID | TB A | RE | AP |
| 6 | 15 | 105 | CK | HENTGEN, PATRICK GEORGE "PAT" | BALA | RE | CK |
| 6 | 16 | 106 | LA | RYAN, MICHAEL SEAN "MIKE" | MINA | OF | LVP |
| 6 | 17 | 107 | BB | SNYDER, KYLE EHREN | KC A | ST | BB |
| 6 | 18 | 108 | MM | HAREN, DANIEL JOHN "DANNY" | STLN | ST | MM |
| ROUND | PICK | OVERALL | CURRENT | ROUND 7 | TEAM | POS | ORIGINAL |
| 7 | 1 | 109 | IFD | HENDRICKSON, MARK A | TORA | ST | BHL |
| 7 | 2 | 110 | SO | DAVIS, JERRY C "J.J." | PITN | OF | SO |
| 7 | 3 | 111 | AT | FOX, CHAD DOUGLAS | FLAN | RE | BP |
| 7 | 4 | 112 | IFD | WRIGHT, JARET SAMUEL | ATLN | RE | KF |
| 7 | 5 | 113 | CK | HOWARD, BENJAMIN RICHARD "BEN" | SD N | ST | AT |
| 7 | 6 | 114 | LVP | DA VANON, JEFFREY GRAHAM "JEFF | ANAA | OF | MIB |
| 7 | 7 | 115 | BCP | CALLOWAY, RONALD ISIAH "RON" | MONN | OF | BCP |
| 7 | 8 | 116 | CC | CUNNANE, WILLIAM JOSEPH "WILL" | ATLN | RE | CC |
| 7 | 9 | 117 | BG | FORDYCE, BROOK ALEXANDER | BALA | C | BG |
| 7 | 10 | 118 | MP | GUIEL, AARON COLIN | KC A | OF | MP |
| 7 | 11 | 119 | IFD | RODNEY, FERNANDO | DETA | RE | IFD |
| 7 | 12 | 120 | CC | DICKEY, ROBERT ALAN "R.A." | TEXA | RE | GIT |
| 7 | 13 | 121 | LA | LIMA, JOSE DESIDERIO (RODRIGUE | KC A | ST | LA |
| 7 | 14 | 122 | AP | BONG, JUNG KEUN | ATLN | RE | AP |
| 7 | 15 | 123 | CK | COTTS, NEAL JAMES | CHIA | ST | CK |
| 7 | 16 | 124 | KF | CUST, JOHN JOSEPH "JACK" | BALA | OF | LVP |
| 7 | 17 | 125 | AP | PHELPS, THOMAS ALLEN "TOMMY" | FLAN | RE | BB |
| 7 | 18 | 126 | AT | SPURLING, CHRISTOPHER MICHAEL | DETA | RE | MM |
| ROUND | PICK | OVERALL | CURRENT | ROUND 8 | TEAM | POS | ORIGINAL |
| 8 | 1 | 127 | BHL | CLARK, ANTHONY CHRISTOPHER "TO | NY N | 1B | BHL |
| 8 | 2 | 128 | SO | WELLEMEYER, TODD ALLEN | CHIN | RE | SO |
| 8 | 3 | 129 | BP | GERMAN, FRANKLYN MIGUEL (MADE) | DETA | RE | BP |
| 8 | 4 | 130 | BCP | OLMEDO, RANIER GUSTAVO "RAY" | CINN | SS | KF |
| 8 | 5 | 131 | MM | NIVAR, RAMON A (MARTINEZ) | TEXA | OF | AT |
| 8 | 6 | 132 | MIB | VOGELSONG, RYAN ANDREW | PITN | ST | MIB |
| 8 | 7 | 133 | BCP | PEREZ, EDUARDO RAFAEL "EDDIE" | MILN | C | BCP |
| 8 | 8 | 134 | CC | RANDOLPH, STEPHEN LA CHARLES " | ARIN | RE | CC |
| 8 | 9 | 135 | BP | VITIELLO, JOSEPH DAVID "JOE" | MONN | OF | BG |
| 8 | 10 | 136 | MP | MC MILLON, WILLIAM EDWARD "BIL | OAKA | OF | MP |
| 8 | 11 | 137 | IFD | BOYD, JASON PERNELL | CLEA | RE | IFD |
| 8 | 12 | 138 | GIT | RESTOVICH, MICHAEL JEROME "MIK | MINA | OF | GIT |
| 8 | 13 | 139 | BHL | HERMANSON, DUSTIN MICHAEL | SF N | RE | LA |
| 8 | 14 | 140 | BB | REYES, RENE | COLN | OF | AP |
| 8 | 15 | 141 | BP | BELL, ROBERT ALLEN "ROB" | TB A | ST | CK |
| 8 | 16 | 142 | LVP | WILSON, ENRIQUE MARTES | NY A | SS | LVP |
| 8 | 17 | 143 | BHL | HUMMEL, TIMOTHY ROBERT "TIM" | CINN | 3B | BB |
| 8 | 18 | 144 | CK | FLAHERTY, JOHN TIMOTHY | NY A | C | MM |
| ROUND | PICK | OVERALL | CURRENT | ROUND 9 | TEAM | POS | ORIGINAL |
| 9 | 1 | 145 | BHL | KIESCHNICK, MICHAEL BROOKS "BR | MILN | RE | BHL |
| 9 | 2 | 146 | BHL | MORRIS, WARREN RANDALL | DETA | 2B | SO |
| 9 | 3 | 147 | BP | VANDERWAL, JOHN HENRY | MILN | OF | BP |
| 9 | 4 | 148 | LVP | FRANCO, JOHN ANTHONY | NY N | RE | KF |
| 9 | 5 | 149 | MIB | CALERO, ENRIQUE NOMAR "KIKO" | STLN | RE | AT |
| 9 | 6 | 150 | AT | CASH, KEVIN FORREST | TORA | C | MIB |
| 9 | 7 | 151 | BCP | LUDWICK, RYAN ANDREW | CLEA | OF | BCP |
| 9 | 8 | 152 | CC | MILLER, TREVER DOUGLAS | TORA | RE | CC |
| 9 | 9 | 153 | BG | CORDERO, WILFREDO NIEVA "WIL" | MONN | 1B | BG |
| 9 | 10 | 154 | MP | MAHAY, RONALD MATTHEW "RON" | TEXA | RE | MP |
| 9 | 11 | 155 | BHL | TELEMACO, AMAURY (REGALADO) | PHIN | ST | IFD |
| 9 | 12 | 156 | AT | MULHOLLAND, TERENCE JOHN "TERR | CLEA | RE | GIT |
| 9 | 13 | 157 | LA | CAIRO, MIGUEL JESUS | STLN | 2B | LA |
| 9 | 14 | 158 | IFD | PEREZ, ANTONIO MIGUEL | TB A | 2B | AP |
| 9 | 15 | 159 | BP | PLESAC, DANIEL THOMAS "DAN" | PHIN | RE | CK |
| 9 | 16 | 160 | GIT | AMEZAGA, ALFREDO | ANAA | SS | LVP |
| 9 | 17 | 161 | BP | ELARTON, VINCENT SCOTT "SCOTT" | COLN | ST | BB |
| 9 | 18 | 162 | BB | COLYER, STEPHEN EDWARD "STEVE" | LA N | RE | MM |
| ROUND | PICK | OVERALL | CURRENT | ROUND 10 | TEAM | POS | ORIGINAL |
| 10 | 1 | 163 | BB | GALLO, MICHAEL DWAIN "MIKE" | HOUN | RE | BHL |
| 10 | 2 | 164 | SO | GRIFFITHS, JEREMY RICHARD | NY N | RE | SO |
| 10 | 3 | 165 | BG | WHEELER, DANIEL MICHAEL "DAN" | NY N | RE | BP |
| 10 | 4 | 166 | MIB | SOSA, JORGE BOLIVAR | TB A | RE | KF |
| 10 | 5 | 167 | GIT | SANTIAGO, JOSE RAFAEL | CLEA | RE | AT |
| 10 | 6 | 168 | IFD | COOK, AARON LANE | COLN | RE | MIB |
| 10 | 7 | 169 | BCP | NEU, MICHAEL S "MIKE" | OAKA | RE | BCP |
| 10 | 8 | 170 | CC | ROBERTSON, NATHAN D "NATE" | DETA | ST | CC |
| 10 | 9 | 171 | CC | FERNANDEZ, JARED WADE | HOUN | RE | BG |
| 10 | 10 | 172 | IFD | OBERMUELLER, WESLEY MITCHELL " | MILN | ST | MP |
| 10 | 11 | 173 | KF | MORBAN, JOSE | BALA | SS | IFD |
| 10 | 12 | 174 | GIT | MC CARTY, DAVID ANDREW | BOSA | OF | GIT |
| 10 | 13 | 175 | BHL | NORTON, GREGORY BLAKEMOOR "GRE | COLN | 3B | LA |
| 10 | 14 | 176 | CK | ELDRED, CALVIN JOHN "CAL" | STLN | RE | AP |
| 10 | 15 | 177 | BCP | FELICIANO, PEDRO JUAN (MOLINA) | NY N | RE | CK |
| 10 | 16 | 178 | LVP | PATTERSON, DANNY SHANE | DETA | RE | LVP |
| 10 | 17 | 179 | BB | ZAUN, GREGORY OWEN "GREG" | COLN | C | BB |
| 10 | 18 | 180 | BP | VAN POPPEL, TODD MATTHEW | CINN | RE | MM |