| ROUND | PICK | OVERALL | CURRENT | ROUND 1 | TEAM | POS | ORIGINAL |
| 1 | 1 | 1 | BCP | PUJOLS, JOSE ALBERTO "ALBERT" | STLN | OF | BCP |
| 1 | 2 | 2 | MM | DUNN, ADAM TROY | CINN | OF | LA |
| 1 | 3 | 3 | SO | OSWALT, ROY EDWARD | HOUN | RE | SO |
| 1 | 4 | 4 | PC | SUZUKI, ICHIRO | SEAA | OF | PC |
| 1 | 5 | 5 | BB | SABATHIA, CARSTEN CHARLES "C.C | CLEA | ST | BB |
| 1 | 6 | 6 | MM | ROLLINS, JAMES CALVIN "JIMMY" | PHIN | SS | BG |
| 1 | 7 | 7 | LVP | SORIANO, ALFONSO G | NY A | 2B | LVP |
| 1 | 8 | 8 | GC | URIBE, JUAN C (TENA) | COLN | SS | GC |
| 1 | 9 | 9 | MIB | SMITH, ROBERT ALLAN "BUD" | STLN | ST | MIB |
| 1 | 10 | 10 | BCP | ORTIZ, JOSE DANIEL (SANTOS) | COLN | 2B | CSB |
| 1 | 11 | 11 | GC | SHEETS, BEN M | MILN | ST | BHL |
| 1 | 12 | 12 | BCP | PENA, CARLOS FELIPE | TEXA | 1B | GIT |
| 1 | 13 | 13 | MIB | PINEIRO, JOEL ALBERTO | SEAA | RE | CK |
| 1 | 14 | 14 | MIB | JOHNSON, NICHOLAS ROBERT "NICK | NY A | 1B | DB |
| 1 | 15 | 15 | AP | DUCKWORTH, BRANDON J | PHIN | ST | AP |
| 1 | 16 | 16 | BCP | HALL, TOBY JASON | TB A | C | KF |
| 1 | 17 | 17 | MK | CRUZ, JUAN CARLOS | CHIN | ST | MK |
| 1 | 18 | 18 | LA | LAWRENCE, BRIAN MICHAEL | SD N | RE | MM |
| ROUND | PICK | OVERALL | CURRENT | ROUND 2 | TEAM | POS | ORIGINAL |
| 2 | 1 | 19 | MK | BAEZ, DANYS | CLEA | RE | BCP |
| 2 | 2 | 20 | MM | GILES, MARCUS WILLIAM | ATLN | 2B | LA |
| 2 | 3 | 21 | SO | ABERNATHY, MICHAEL BRENT "BREN | TB A | 2B | SO |
| 2 | 4 | 22 | PC | ZIMMERMAN, JEFFREY ROSS "JEFF" | TEXA | RE | PC |
| 2 | 5 | 23 | BB | LYON, BRANDON J | TORA | ST | BB |
| 2 | 6 | 24 | MIB | LOPEZ, FELIPE | TORA | 3B | BG |
| 2 | 7 | 25 | LVP | LOWE, JONATHON SEAN "SEAN" | CHIA | RE | LVP |
| 2 | 8 | 26 | BCP | BATISTA, MIGUEL JEREZ | ARIN | RE | GC |
| 2 | 9 | 27 | MIB | KENNEDY, JOSEPH DARLEY "JOE" | TB A | ST | MIB |
| 2 | 10 | 28 | CK | MIENTKIEWICZ, DOUGLAS ANDREW " | MINA | 1B | CSB |
| 2 | 11 | 29 | BB | HILJUS, ERIK KRISTIAN | OAKA | RE | BHL |
| 2 | 12 | 30 | GIT | JARVIS, KEVIN THOMAS | SD N | ST | GIT |
| 2 | 13 | 31 | MIB | JIMENEZ, D'ANGELO | SD N | SS | CK |
| 2 | 14 | 32 | LVP | REDDING, TIMOTHY J "TIM" | HOUN | RE | DB |
| 2 | 15 | 33 | AP | ECKSTEIN, DAVID MARK | ANAA | SS | AP |
| 2 | 16 | 34 | LVP | COLOME, JESUS (DE LA CRUZ) | TB A | RE | KF |
| 2 | 17 | 35 | MK | MILLAR, KEVIN CHARLES | FLAN | OF | MK |
| 2 | 18 | 36 | DB | PATTERSON, DONALD COREY "COREY | CHIN | OF | MM |
| ROUND | PICK | OVERALL | CURRENT | ROUND 3 | TEAM | POS | ORIGINAL |
| 3 | 1 | 37 | BCP | MC LEMORE, MARK TREMELL | SEAA | OF | BCP |
| 3 | 2 | 38 | MM | PROKOPEC, KENNETH LUKE "LUKE" | LA N | RE | LA |
| 3 | 3 | 39 | SO | ROWAND, AARON RYAN | CHIA | OF | SO |
| 3 | 4 | 40 | PC | JOHNSON, JASON MICHAEL | BALA | ST | PC |
| 3 | 5 | 41 | BB | WILLIAMS, DAVID AARON | PITN | ST | BB |
| 3 | 6 | 42 | BG | IZTURIS, CESAR D | TORA | 2B | BG |
| 3 | 7 | 43 | LVP | GEORGE, CHRISTOPHER COLEMAN "C | KC A | ST | LVP |
| 3 | 8 | 44 | GC | BERE, JASON PHILLIP | CHIN | ST | GC |
| 3 | 9 | 45 | MIB | ESCOBAR, ALEXANDER JOSE "ALEX" | NY N | OF | MIB |
| 3 | 10 | 46 | SO | BROWN, DERMAL BRAM "DEE" | KC A | OF | CSB |
| 3 | 11 | 47 | LVP | STURTZE, TANYON JAMES | TB A | RE | BHL |
| 3 | 12 | 48 | GIT | TOWERS, JOSHUA ERIC "JOSH" | BALA | ST | GIT |
| 3 | 13 | 49 | CK | YOUNG, MICHAEL BRIAN "MIKE" | TEXA | 2B | CK |
| 3 | 14 | 50 | BCP | CORNEJO, NATHAN JOHN "NATE" | DETA | ST | DB |
| 3 | 15 | 51 | BB | PATTERSON, DANNY SHANE | DETA | RE | AP |
| 3 | 16 | 52 | BB | FILE, ROBERT MICHAEL "BOB" | TORA | RE | KF |
| 3 | 17 | 53 | MK | FRANKLIN, RYAN RAY | SEAA | RE | MK |
| 3 | 18 | 54 | MM | FOSSUM, CASEY PAUL | BOSA | RE | MM |
| ROUND | PICK | OVERALL | CURRENT | ROUND 4 | TEAM | POS | ORIGINAL |
| 4 | 1 | 55 | BCP | RELAFORD, DESMOND LAMONT "DESI | NY N | 2B | BCP |
| 4 | 2 | 56 | LVP | FOX, CHAD DOUGLAS | MILN | RE | LA |
| 4 | 3 | 57 | CSB | GONZALEZ, WIKLENMAN VICENTE | SD N | C | SO |
| 4 | 4 | 58 | PC | GIBBONS, JAY JONATHON | BALA | OF | PC |
| 4 | 5 | 59 | BB | KIELTY, ROBERT MICHAEL "BOBBY" | MINA | OF | BB |
| 4 | 6 | 60 | BG | SANDBERG, JARED LAWRENCE | TB A | 3B | BG |
| 4 | 7 | 61 | LVP | WILSON, CRAIG ALAN | PITN | 1B | LVP |
| 4 | 8 | 62 | BCP | CORDOVA, MARTIN KEEVIN "MARTY" | CLEA | OF | GC |
| 4 | 9 | 63 | GIT | DE JEAN, MICHEL DWAIN "MIKE" | MILN | RE | MIB |
| 4 | 10 | 64 | CSB | MC EWING, JOSEPH EARL "JOE" | NY N | OF | CSB |
| 4 | 11 | 65 | GC | DAVIS, JOHNNY LANCE "LANCE" | CINN | ST | BHL |
| 4 | 12 | 66 | GIT | COGGIN, DAVID RAYMOND | PHIN | ST | GIT |
| 4 | 13 | 67 | CK | WILKERSON, STEPHEN BRADLEY "BR | MONN | OF | CK |
| 4 | 14 | 68 | DB | WEBER, BENJAMIN EDWARD "BEN" | ANAA | RE | DB |
| 4 | 15 | 69 | BG | REITSMA, CHRISTOPHER MICHAEL " | CINN | ST | AP |
| 4 | 16 | 70 | BCP | LITTLE, MARK TRAVIS | COLN | OF | KF |
| 4 | 17 | 71 | PC | MATTHEWS, MICHAEL SCOTT "MIKE" | STLN | RE | MK |
| 4 | 18 | 72 | MM | BIERBRODT, NICHOLAS RAYMOND "N | TB A | ST | MM |
| ROUND | PICK | OVERALL | CURRENT | ROUND 5 | TEAM | POS | ORIGINAL |
| 5 | 1 | 73 | GC | ZAMBRANO, VICTOR MANUEL | TB A | RE | BCP |
| 5 | 2 | 74 | MM | MC KNIGHT, TONY MARK | PITN | ST | LA |
| 5 | 3 | 75 | SO | CARRARA, GIOVANNI | LA N | RE | SO |
| 5 | 4 | 76 | PC | BAILEY, PHILLIP CORY "CORY" | KC A | RE | PC |
| 5 | 5 | 77 | KF | PRINZ, BRET | ARIN | RE | BB |
| 5 | 6 | 78 | BG | SHINJO, TSUYOSHI | NY N | OF | BG |
| 5 | 7 | 79 | LVP | WRIGHT, JONATHAN DANIEL "DAN" | CHIA | ST | LVP |
| 5 | 8 | 80 | GC | TYNER, JASON RENYT | TB A | OF | GC |
| 5 | 9 | 81 | BB | WOOTEN, WILLIAM SHAWN "SHAWN" | ANAA | C | MIB |
| 5 | 10 | 82 | SO | PAUL, JOSHUA WILLIAM "JOSH" | CHIA | C | CSB |
| 5 | 11 | 83 | BCP | GLOVER, JOHN GARY "GARY" | CHIA | RE | BHL |
| 5 | 12 | 84 | GIT | FIGUEROA, NELSON WALTER | PHIN | RE | GIT |
| 5 | 13 | 85 | CSB | SIERRA, RUBEN ANGEL (GARCIA) | TEXA | OF | CK |
| 5 | 14 | 86 | DB | BORBON, PEDRO FELIX | TORA | RE | DB |
| 5 | 15 | 87 | PC | MUNSON, ERIC WALTER | DETA | 1B | AP |
| 5 | 16 | 88 | MK | VAZQUEZ, RAMON LUIS | SEAA | SS | MK |
| 5 | 17 | 89 | MM | LIEFER, JEFFREY DAVID "JEFF" | CHIA | OF | MM |
| 5 | 18 | 90 | KF | RISKE, DAVID RICHARD | CLEA | RE | KF |
| ROUND | PICK | OVERALL | CURRENT | ROUND 6 | TEAM | POS | ORIGINAL |
| 6 | 1 | 91 | MIB | WISE, MATTHEW JOHN "MATT" | ANAA | ST | BCP |
| 6 | 2 | 92 | LA | GARCIA, GUSTAVO "KARIM" | CLEA | OF | LA |
| 6 | 3 | 93 | SO | THOMSON, JOHN CARL | COLN | ST | SO |
| 6 | 4 | 94 | PC | NORTON, GREGORY BLAKEMOOR "GRE | COLN | OF | PC |
| 6 | 5 | 95 | BB | RIGGAN, JERROD ASHLEY | NY N | RE | BB |
| 6 | 6 | 96 | BG | TAVAREZ, JULIAN | CHIN | ST | BG |
| 6 | 7 | 97 | BHL | WILSON, JACK EUGENE | PITN | SS | LVP |
| 6 | 8 | 98 | GC | FIKAC, JEREMY JOSEPH | SD N | RE | GC |
| 6 | 9 | 99 | GC | CHACON, SHAWN A | COLN | ST | MIB |
| 6 | 10 | 100 | CSB | WHITE, DEVON MARKES | MILN | OF | CSB |
| 6 | 11 | 101 | BB | BUTLER, JUSTIN BRENT "BRENT" | COLN | 2B | BHL |
| 6 | 12 | 102 | GIT | CHARLTON, NORMAN WOOD "NORM" | SEAA | RE | GIT |
| 6 | 13 | 103 | KF | GUERRERO, WILTON (ALVINO) | CINN | SS | CK |
| 6 | 14 | 104 | DB | BIDDLE, LEE FRANCIS "ROCKY" | CHIA | RE | DB |
| 6 | 15 | 105 | AP | BRADFORD, CHADWICK LEE "CHAD" | OAKA | RE | AP |
| 6 | 16 | 106 | MK | JENSEN, LARRY RYAN "RYAN" | SF N | RE | MK |
| 6 | 17 | 107 | MM | PETTYJOHN, ADAM CHRISTOPHER | DETA | RE | MM |
| 6 | 18 | 108 | KF | BYRD, PAUL GREGORY | KC A | ST | KF |
| ROUND | PICK | OVERALL | CURRENT | ROUND 7 | TEAM | POS | ORIGINAL |
| 7 | 1 | 109 | BCP | HALTER, SHANE DAVID | DETA | SS | BCP |
| 7 | 2 | 110 | LA | SEANEZ, RUDY CABALLERO | ATLN | RE | LA |
| 7 | 3 | 111 | SO | TIMLIN, MICHAEL AUGUST "MIKE" | STLN | RE | SO |
| 7 | 4 | 112 | PC | PHELPS, TRAVIS | TB A | RE | PC |
| 7 | 5 | 113 | BB | HELMS, WESLEY RAY "WES" | ATLN | 1B | BB |
| 7 | 6 | 114 | AP | IBANEZ, RAUL JAVIER | KC A | OF | BG |
| 7 | 7 | 115 | MM | SHUMPERT, TERRANCE DARNELL "TE | COLN | 2B | LVP |
| 7 | 8 | 116 | GC | ROBERTS, WILLIS AUGUSTO | BALA | RE | GC |
| 7 | 9 | 117 | CK | MACIAS, JOSE PRADO (SALAZAR) | DETA | 3B | MIB |
| 7 | 10 | 118 | CSB | CABRERA, JOSE ALBERTO | ATLN | RE | CSB |
| 7 | 11 | 119 | DB | RAPP, PATRICK LELAND "PAT" | ANAA | ST | BHL |
| 7 | 12 | 120 | LVP | ACEVEDO, JOSE OMAR | CINN | ST | GIT |
| 7 | 13 | 121 | AP | STECHSCHULTE, EUGENE URBAN "GE | STLN | RE | CK |
| 7 | 14 | 122 | LA | LINCOLN, MICHAEL GEORGE "MIKE" | PITN | RE | DB |
| 7 | 15 | 123 | AP | STEWART, SCOTT EDWARD | MONN | RE | AP |
| 7 | 16 | 124 | MK | MYERS, GREGORY RICHARD "GREG" | OAKA | C | MK |
| 7 | 17 | 125 | MM | AUSTIN, JEFFREY WELLINGTON "JE | KC A | RE | MM |
| 7 | 18 | 126 | KF | MATTHEWS, GARY NATHANIEL | PITN | OF | KF |
| ROUND | PICK | OVERALL | CURRENT | ROUND 8 | TEAM | POS | ORIGINAL |
| 8 | 1 | 127 | BCP | REDMOND, MICHAEL PATRICK "MIKE | FLAN | C | BCP |
| 8 | 2 | 128 | LA | ROBINSON, KERRY KEITH | STLN | OF | LA |
| 8 | 3 | 129 | SO | DAVIS, KANE THOMAS | COLN | RE | SO |
| 8 | 4 | 130 | PC | BROWER, JAMES ROBERT "JIM" | CINN | RE | PC |
| 8 | 5 | 131 | CSB | GONZALEZ, DICKY ANGEL | NY N | RE | BB |
| 8 | 6 | 132 | BG | HILLENBRAND, SHEA MATTHEW | BOSA | 3B | BG |
| 8 | 7 | 133 | LVP | SANTOS, VICTOR IRVING | DETA | RE | LVP |
| 8 | 8 | 134 | BHL | SPIVEY, ERNEST LEE "JUNIOR" | ARIN | 2B | GC |
| 8 | 9 | 135 | MIB | VALENT, ERIC CHRISTIAN | PHIN | OF | MIB |
| 8 | 10 | 136 | KF | CANSECO, JOSE | CHIA | OF | CSB |
| 8 | 11 | 137 | KF | MICHALAK, CHRISTIAN MATTHEW "C | TEXA | RE | BHL |
| 8 | 12 | 138 | GIT | GIL, ROMAR BENJAMIN "BENJI" | ANAA | SS | GIT |
| 8 | 13 | 139 | CK | JULIO, JORGE DANDYS | BALA | RE | CK |
| 8 | 14 | 140 | DB | LOHSE, KYLE MATTHEW | MINA | ST | DB |
| 8 | 15 | 141 | AP | CHRISTIANSEN, JASON SAMUEL | SF N | RE | AP |
| 8 | 16 | 142 | MIB | HAYNES, JIMMY WAYNE | MILN | ST | KF |
| 8 | 17 | 143 | MK | KIM, SUN WOO | BOSA | RE | MK |
| 8 | 18 | 144 | LA | CRESSEND, JOHN BAPTISTE "JACK" | MINA | RE | MM |
| ROUND | PICK | OVERALL | CURRENT | ROUND 9 | TEAM | POS | ORIGINAL |
| 9 | 1 | 145 | BCP | WESTBROOK, JACOB CAUTHEN "JAKE | CLEA | RE | BCP |
| 9 | 2 | 146 | DB | RAINES, TIMOTHY "TIM" | BALA | OF | LA |
| 9 | 3 | 147 | BB | MADURO, CALVIN GREGORY | BALA | RE | SO |
| 9 | 4 | 148 | GC | INGE, CHARLES BRANDON "BRANDON | DETA | C | PC |
| 9 | 5 | 149 | BB | LATHAM, CHRISTOPHER JOSEPH "CH | TORA | OF | BB |
| 9 | 6 | 150 | BG | WINN, DWIGHT RANDALL "RANDY" | TB A | OF | BG |
| 9 | 7 | 151 | LVP | MLICKI, DAVID JOHN "DAVE" | HOUN | ST | LVP |
| 9 | 8 | 152 | BHL | CHOATE, RANDOL DOYOL "RANDY" | NY A | RE | GC |
| 9 | 9 | 153 | MIB | MYETTE, AARON KENNETH | TEXA | RE | MIB |
| 9 | 10 | 154 | CSB | HUNTER, BRIAN LEE | PHIN | OF | CSB |
| 9 | 11 | 155 | BHL | REDMAN, JULIAN JAWONN "TIKE" | PITN | OF | BHL |
| 9 | 12 | 156 | GIT | JOHNSON, WILLIAM RUSSELL "RUSS | TB A | 3B | GIT |
| 9 | 13 | 157 | CK | VIZCAINO, LUIS (ARIAS) | OAKA | RE | CK |
| 9 | 14 | 158 | DB | DE ROSA, MARK THOMAS | ATLN | SS | DB |
| 9 | 15 | 159 | PC | FELIZ, PEDRO JULIO | SF N | 3B | AP |
| 9 | 16 | 160 | MK | PINEDA, LUIS A | DETA | RE | MK |
| 9 | 17 | 161 | MM | BOTTALICO, RICKY PAUL | PHIN | RE | MM |
| 9 | 18 | 162 | KF | NUNEZ, JOSE ANTONIO | SD N | RE | KF |
| ROUND | PICK | OVERALL | CURRENT | ROUND 10 | TEAM | POS | ORIGINAL |
| 10 | 1 | 163 | BCP | CHRISTENSEN, MC KAY ANDREW | LA N | OF | BCP |
| 10 | 2 | 164 | LA | ZERBE, WILLIAM CHAD "CHAD" | SF N | RE | LA |
| 10 | 3 | 165 | SO | PEREZ, TOMAS ORLANDO | PHIN | 2B | SO |
| 10 | 4 | 166 | PC | ARROYO, BRONSON ANTHONY | PITN | RE | PC |
| 10 | 5 | 167 | BB | BOCACHICA, HIRAM COLON | LA N | 2B | BB |
| 10 | 6 | 168 | BG | GOMEZ, CHRISTOPHER CORY "CHRIS | TB A | SS | BG |
| 10 | 7 | 169 | DB | MACHADO, ROBERT ALEXIS | CHIN | C | LVP |
| 10 | 8 | 170 | KF | GRILLI, JASON MICHAEL | FLAN | ST | GC |
| 10 | 9 | 171 | MIB | FUENTES, BRIAN CHRISTOPHER | SEAA | RE | MIB |
| 10 | 10 | 172 | CSB | GRAFFANINO, ANTHONY JOSEPH "TO | CHIA | 3B | CSB |
| 10 | 11 | 173 | BHL | PRINCE, THOMAS ALBERT "TOM" | MINA | C | BHL |
| 10 | 12 | 174 | GIT | SABEL, ERIK DOUGLAS | ARIN | RE | GIT |
| 10 | 13 | 175 | CK | NUNEZ, ABRAHAM ORLANDO (ADAMES | PITN | 2B | CK |
| 10 | 14 | 176 | DB | LEVRAULT, ALLEN HARRY | MILN | RE | DB |
| 10 | 15 | 177 | AP | ROBERTS, BRIAN MICHAEL | BALA | SS | AP |
| 10 | 16 | 178 | CK | ESTRADA, JOHNNY P | PHIN | C | KF |
| 10 | 17 | 179 | MK | ROLLS, DAMIAN MICHAEL | TB A | 2B | MK |
| 10 | 18 | 180 | LA | BARKER, GLEN F | HOUN | OF | MM |