| ROUND | PICK | OVERALL | CURRENT | ALASKA | TEAM | POS | ORIGINAL |
| 1 | 11 | 11 | AP | TAM, JEFFREY EUGENE "JEFF" | OAKA | RE | AP |
| 2 | 11 | 29 | AP | PAYTON, JAYSON LEE "JAY" | NY N | OF | AP |
| 3 | 11 | 47 | AP | PADILLA, VICENTE D | PHIN | RE | AP |
| 5 | 11 | 83 | AP | POTE, LOUIS WILLIAM "LOU" | ANAA | RE | AP |
| 6 | 11 | 101 | AP | FULTZ, RICHARD AARON "AARON" | SF N | RE | AP |
| 7 | 16 | 124 | AP | ROMERO, JUAN C "J.C." | MINA | ST | KF |
| 8 | 11 | 137 | AP | MENECHINO, FRANK | OAKA | 2B | AP |
| 8 | 13 | 139 | AP | ARROYO, BRONSON ANTHONY | PITN | RE | ERE |
| 9 | 11 | 155 | AP | DE LA ROSA, TOMAS | MONN | SS | AP |
| 9 | 18 | 162 | AP | GROOM, WEDSEL GARY "BUDDY" | BALA | RE | MM |
| 10 | 11 | 173 | AP | GOODEN, DWIGHT EUGENE | NY A | RE | AP |
| ROUND | PICK | OVERALL | CURRENT | BUFFALO | TEAM | POS | ORIGINAL |
| 1 | 8 | 8 | BG | LEE, DERREK LEON | FLAN | 1B | BG |
| 1 | 18 | 18 | BG | REAMES, WILLIAM BRITT "BRITT" | STLN | ST | MM |
| 2 | 8 | 26 | BG | LUGO, JULIO CESAR | HOUN | SS | BG |
| 2 | 18 | 36 | BG | BROWN, ADRIAN DEMOND | PITN | OF | MM |
| 4 | 8 | 62 | BG | MERCEDES, JOSE MIGUEL | BALA | RE | BG |
| 4 | 18 | 72 | BG | POLITTE, CLIFFORD ANTHONY "CLI | PHIN | RE | MM |
| 6 | 8 | 98 | BG | SCHOENEWEIS, SCOTT DAVID | ANAA | ST | BG |
| 7 | 8 | 116 | BG | DARENSBOURG, VICTOR ANTHONY "V | FLAN | RE | BG |
| 8 | 8 | 134 | BG | MILLAR, KEVIN CHARLES | FLAN | 1B | BG |
| 9 | 8 | 152 | BG | CANIZARO, JASON KYLE "JAY" | MINA | 2B | BG |
| 10 | 8 | 170 | BG | LOPEZ, LUIS MANUEL | MILN | SS | BG |
| ROUND | PICK | OVERALL | CURRENT | BAR HARBOR | TEAM | POS | ORIGINAL |
| 1 | 17 | 17 | BHL | SMITH, CHARLES EDWARD "CHUCK" | FLAN | ST | BHL |
| 2 | 12 | 30 | BHL | BUEHRLE, MARK A | CHIA | RE | FW |
| 5 | 12 | 84 | BHL | TAVAREZ, JULIAN | COLN | RE | FW |
| 7 | 1 | 109 | BHL | ELDRED, CALVIN JOHN "CAL" | CHIA | ST | LVP |
| 7 | 7 | 115 | BHL | HALTER, SHANE DAVID | DETA | 3B | STB |
| 7 | 17 | 125 | BHL | KREUTER, CHAD MICHAEL | LA N | C | BHL |
| 7 | 18 | 126 | BHL | PALMEIRO, ORLANDO | ANAA | OF | MM |
| 9 | 16 | 160 | BHL | RAIN, STEVEN NICHOLAS "STEVE" | CHIN | RE | KF |
| 9 | 17 | 161 | BHL | ALICEA, LUIS RENE | TEXA | 2B | BHL |
| 10 | 17 | 179 | BHL | OLIVER, JOSEPH MELTON "JOE" | SEAA | C | BHL |
| ROUND | PICK | OVERALL | CURRENT | CHESHIRE | TEAM | POS | ORIGINAL |
| 2 | 15 | 33 | CC | KINNEY, MATTHEW JOHN "MATT" | MINA | ST | CC |
| 3 | 15 | 51 | CC | BRADLEY, MILTON O | MONN | OF | CC |
| 4 | 15 | 69 | CC | LOMBARD, GEORGE PAUL | ATLN | OF | CC |
| 6 | 3 | 93 | CC | CORA, JOSE ALEX "ALEX" | LA N | SS | GC |
| 6 | 4 | 94 | CC | PARRISH, JOHN HENRY | BALA | ST | TT |
| 6 | 15 | 105 | CC | QUEVEDO, RUBEN EDUARDO | CHIN | RE | CC |
| 7 | 3 | 111 | CC | BAUTISTA, DANIEL "DANNY" | ARIN | OF | GC |
| 8 | 3 | 129 | CC | MC CARTY, DAVID ANDREW | KC A | 1B | GC |
| 8 | 15 | 141 | CC | LODUCA, PAUL ANTHONY | LA N | C | CC |
| 9 | 15 | 159 | CC | RYAN, ROBERT VICTOR "B.J." | BALA | RE | CC |
| 10 | 15 | 177 | CC | FRYE, JEFFREY DUSTIN "JEFF" | COLN | 2B | CC |
| ROUND | PICK | OVERALL | CURRENT | KINGS | TEAM | POS | ORIGINAL |
| 2 | 5 | 23 | CK | SASAKI, KAZUHIRO | SEAA | RE | CK |
| 3 | 5 | 41 | CK | COX, CHARLES STEVEN "STEVE" | TB A | OF | CK |
| 3 | 17 | 53 | CK | MILLER, WADE T | HOUN | ST | BHL |
| 4 | 5 | 59 | CK | MARTINEZ, RAMON E | SF N | SS | CK |
| 5 | 5 | 77 | CK | MATHENY, MICHAEL SCOTT "MIKE" | STLN | C | CK |
| 6 | 14 | 104 | CK | BLAIR, WILLIAM ALLEN "WILLIE" | DETA | RE | JG |
| 6 | 16 | 106 | CK | HAYES, CHARLES DE WAYNE "CHARL | MILN | 3B | KF |
| ROUND | PICK | OVERALL | CURRENT | DURHAM | TEAM | POS | ORIGINAL |
| 1 | 10 | 10 | DB | CASTILLO, FRANK ANTHONY | TORA | ST | LA |
| 2 | 16 | 34 | DB | VANDERWAL, JOHN HENRY | PITN | OF | KF |
| 4 | 6 | 60 | DB | POLANCO, PLACIDO ENRIQUE | STLN | 2B | DB |
| 4 | 13 | 67 | DB | JAMES, MICHAEL ELMO "MIKE" | STLN | RE | ERE |
| 5 | 6 | 78 | DB | ZAUN, GREGORY OWEN "GREG" | KC A | C | DB |
| 5 | 14 | 86 | DB | MANZANILLO, JOSIAS | PITN | RE | JG |
| 5 | 16 | 88 | DB | TRACY, ANDREW MICHAEL "ANDY" | MONN | 3B | KF |
| 5 | 17 | 89 | DB | LOWERY, QUENTON TERRELL "TERRE | SF N | OF | BHL |
| 6 | 6 | 96 | DB | RAMSAY, ROBERT ARTHUR | SEAA | RE | DB |
| 7 | 10 | 118 | DB | FICK, ROBERT CHARLES JOHN "ROB | DETA | 1B | LA |
| 7 | 11 | 119 | DB | BERE, JASON PHILLIP | CLEA | ST | AP |
| 7 | 14 | 122 | DB | PEREZ, TIMONIEL M | NY N | OF | JG |
| 8 | 14 | 140 | DB | HUNTER, BRIAN LEE | CINN | OF | JG |
| 8 | 16 | 142 | DB | SOJO, LUIS | NY A | 3B | KF |
| 9 | 5 | 149 | DB | COUNSELL, CRAIG JOHN | ARIN | 2B | CK |
| 9 | 6 | 150 | DB | CRESPO, FELIPE JAVIER (CLAUSIO | SF N | OF | DB |
| 9 | 14 | 158 | DB | FABREGAS, JORGE | KC A | C | JG |
| ROUND | PICK | OVERALL | CURRENT | ELK RIVER | TEAM | POS | ORIGINAL |
| 1 | 13 | 13 | ERE | GARLAND, JON STEVEN | CHIA | ST | ERE |
| 2 | 13 | 31 | ERE | RIVAS, LUIS WILFREDO | MINA | 2B | ERE |
| 3 | 13 | 49 | ERE | PIERRE, JUAN D'VAUGHN | COLN | OF | ERE |
| 7 | 13 | 121 | ERE | FERNANDEZ, OSVALDO | CINN | ST | ERE |
| 9 | 13 | 157 | ERE | CASANOVA, RAUL | MILN | C | ERE |
| 10 | 1 | 163 | ERE | ALMANZAR, CARLOS MANUEL | SD N | RE | LVP |
| ROUND | PICK | OVERALL | CURRENT | FENNARIO | TEAM | POS | ORIGINAL |
| 1 | 12 | 12 | FW | OHKA, TOMOKAZU | BOSA | ST | FW |
| 3 | 12 | 48 | FW | GARDNER, MARK ALLAN | SF N | RE | FW |
| 6 | 12 | 102 | FW | RIEDLING, JOHN RICHARD | CINN | RE | FW |
| 7 | 12 | 120 | FW | PLESAC, DANIEL THOMAS "DAN" | ARIN | RE | FW |
| 8 | 1 | 127 | FW | TYNER, JASON RENYT | TB A | OF | LVP |
| 8 | 12 | 138 | FW | DONNELS, CHRIS BARTON | LA N | OF | FW |
| 9 | 12 | 156 | FW | CROMER, DAVID THOMAS "D.T." | CINN | 1B | FW |
| 10 | 12 | 174 | FW | COOPER, BRIAN JOHN | ANAA | ST | FW |
| ROUND | PICK | OVERALL | CURRENT | GREENVILLE | TEAM | POS | ORIGINAL |
| 1 | 3 | 3 | GC | FURCAL, RAFAEL | ATLN | SS | GC |
| 2 | 3 | 21 | GC | REDMAN, MARK ALLEN | MINA | RE | GC |
| 2 | 17 | 35 | GC | LESKANIC, CURTIS JOHN "CURT" | MILN | RE | BHL |
| 3 | 2 | 38 | GC | STEIN, WILLIAM BLAKE "BLAKE" | KC A | ST | PC |
| 3 | 3 | 39 | GC | TOLLBERG, BRIAN PATRICK | SD N | ST | GC |
| 4 | 3 | 57 | GC | ETHERTON, SETH MICHAEL | ANAA | ST | GC |
| 4 | 12 | 66 | GC | DESSENS, ELMER | CINN | RE | FW |
| 5 | 3 | 75 | GC | CRUZ, NELSON | DETA | RE | GC |
| ROUND | PICK | OVERALL | CURRENT | JAMES GANG | TEAM | POS | ORIGINAL |
| 1 | 14 | 14 | JG | LONG, TERRENCE DEON | OAKA | OF | JG |
| 2 | 14 | 32 | JG | BRANYAN, RUSSELL OLES | CLEA | OF | JG |
| 3 | 6 | 42 | JG | BARCELO, LORENZO ANTONIO | CHIA | RE | DB |
| 3 | 14 | 50 | JG | MARQUIS, JASON SCOTT | ATLN | RE | JG |
| 4 | 14 | 68 | JG | LE CROY, MATTHEW HANKS "MATT" | MINA | C | JG |
| 6 | 9 | 99 | JG | GUZMAN, GERALDO M | ARIN | RE | SO |
| 8 | 17 | 143 | JG | PAINTER, LANCE T | TORA | RE | BHL |
| 10 | 14 | 176 | JG | CARDONA, JAVIER PETERSON | DETA | C | JG |
| ROUND | PICK | OVERALL | CURRENT | FLOODS | TEAM | POS | ORIGINAL |
| 1 | 15 | 15 | KF | FYHRIE, MICHAEL EDWIN "MIKE" | ANAA | RE | CC |
| 3 | 16 | 52 | KF | MYERS, MICHAEL STANLEY "MIKE" | COLN | RE | KF |
| 4 | 16 | 70 | KF | KING, RAYMOND KEITH "RAY" | MILN | RE | KF |
| 4 | 17 | 71 | KF | HOUSE, CRAIG M | COLN | RE | BHL |
| 5 | 4 | 76 | KF | BROWN, ROOSEVELT LAWAYNE | CHIN | OF | TT |
| 5 | 7 | 79 | KF | SPARKS, STEVEN WILLIAM "STEVE" | DETA | RE | STB |
| 5 | 8 | 80 | KF | FETTERS, MICHAEL LEE "MIKE" | LA N | RE | BG |
| 6 | 5 | 95 | KF | ORTIZ, HECTOR MONTANEZ | KC A | C | CK |
| 6 | 10 | 100 | KF | ANDERSON, JAMES DREW "JIMMY" | PITN | ST | LA |
| 6 | 13 | 103 | KF | RIGDON, PAUL DAVID | MILN | ST | ERE |
| 6 | 17 | 107 | KF | ESTRADA, HORACIO (JIMENEZ) | MILN | RE | BHL |
| 7 | 15 | 123 | KF | PEREZ, SANTIAGO ALBERTO | MILN | SS | CC |
| 9 | 7 | 151 | KF | WOHLERS, MARK EDWARD | CINN | RE | STB |
| 10 | 13 | 175 | KF | WEHNER, JOHN PAUL | PITN | 3B | ERE |
| 10 | 16 | 178 | KF | CREEK, PAUL DOUGLAS "DOUG" | TB A | RE | KF |
| ROUND | PICK | OVERALL | CURRENT | LA GRANGE | TEAM | POS | ORIGINAL |
| 2 | 10 | 28 | LA | WUNSCH, KELLY DOUGLAS | CHIA | RE | LA |
| 3 | 10 | 46 | LA | HERGES, MATTHEW TYLER "MATT" | LA N | RE | LA |
| 4 | 10 | 64 | LA | PERRY, HERBERT EDWARD | CHIA | 3B | LA |
| 8 | 10 | 136 | LA | SLUSARSKI, JOSEPH ANDREW "JOE" | HOUN | RE | LA |
| 9 | 10 | 154 | LA | MIRABELLI, DOUGLAS ANTHONY "DO | SF N | C | LA |
| 10 | 10 | 172 | LA | RAMIREZ, ALEXANDER RAMON "ALEX | PITN | OF | LA |
| ROUND | PICK | OVERALL | CURRENT | LAS VEGAS | TEAM | POS | ORIGINAL |
| 1 | 1 | 1 | LVP | BURRELL, PATRICK BRIAN "PAT" | PHIN | 1B | LVP |
| 1 | 5 | 5 | LVP | PENNY, BRADLEY WAYNE "BRAD" | FLAN | ST | CK |
| 1 | 6 | 6 | LVP | HUFF, AUBREY L | TB A | 3B | DB |
| 1 | 16 | 16 | LVP | MULDER, MARK ALAN | OAKA | ST | KF |
| 2 | 1 | 19 | LVP | PIATT, ADAM DAVID | OAKA | OF | LVP |
| 2 | 6 | 24 | LVP | TRUBY, CHRISTOPHER JOHN "CHRIS | HOUN | 3B | DB |
| 3 | 1 | 37 | LVP | KOHLMEIER, RYAN LYLE | BALA | RE | LVP |
| 4 | 1 | 55 | LVP | BERGERON, PETER F | MONN | OF | LVP |
| 4 | 11 | 65 | LVP | WILSON, KRISTOPHER KYLE "KRIS" | KC A | RE | AP |
| 5 | 1 | 73 | LVP | WALKER, KEVIN MICHAEL | SD N | RE | LVP |
| 9 | 1 | 145 | LVP | SCHNEIDER, BRIAN DUNCAN | MONN | C | LVP |
| ROUND | PICK | OVERALL | CURRENT | MUDLARKS | TEAM | POS | ORIGINAL |
| 3 | 8 | 44 | MM | HANSEN, DAVID ANDREW "DAVE" | LA N | 1B | BG |
| 3 | 18 | 54 | MM | OSUNA, PEDRO ANTONIO "ANTONIO" | LA N | RE | MM |
| 5 | 10 | 82 | MM | DAVIS, DOUGLAS P "DOUG" | TEXA | RE | LA |
| 5 | 15 | 87 | MM | DURBIN, CHAD GRIFFIN | KC A | ST | CC |
| 5 | 18 | 90 | MM | REYES, DENNIS (VALARDE) | CINN | RE | MM |
| 7 | 4 | 112 | MM | BERNERO, ADAM G | DETA | RE | TT |
| 8 | 6 | 132 | MM | BROWN, EMIL QUINCY | PITN | OF | DB |
| 8 | 18 | 144 | MM | DOWNS, SCOTT JEREMY | MONN | ST | MM |
| 10 | 6 | 168 | MM | GUTHRIE, MARK ANDREW | TORA | RE | DB |
| 10 | 18 | 180 | MM | BEIRNE, KEVIN PATRICK | CHIA | RE | MM |
| ROUND | PICK | OVERALL | CURRENT | PLANO | TEAM | POS | ORIGINAL |
| 1 | 2 | 2 | PC | ANKIEL, RICHARD ALEXANDER "RIC | STLN | ST | PC |
| 2 | 2 | 20 | PC | QUINN, MARK DAVID | KC A | OF | PC |
| 4 | 2 | 56 | PC | REKAR, BRYAN ROBERT | TB A | ST | PC |
| 5 | 2 | 74 | PC | PICHARDO, HIPOLITO ANTONIO | BOSA | RE | PC |
| 6 | 2 | 92 | PC | LIDLE, CORY FULTON | TB A | RE | PC |
| 7 | 2 | 110 | PC | PRATT, TODD ALAN | NY N | C | PC |
| 8 | 2 | 128 | PC | ZULETA, JULIO ERNESTO (TAPIA) | CHIN | 1B | PC |
| 9 | 2 | 146 | PC | CUBILLAN, DARWIN HARRIKSON (SA | TEXA | RE | PC |
| 9 | 3 | 147 | PC | BONES, RICARDO "RICKY" | FLAN | RE | GC |
| 10 | 2 | 164 | PC | MATOS, LUIS D | BALA | OF | PC |
| 10 | 3 | 165 | PC | LUNAR, FERNANDO JOSE | BALA | C | GC |
| ROUND | PICK | OVERALL | CURRENT | SPRINGFIELD | TEAM | POS | ORIGINAL |
| 1 | 9 | 9 | SO | ARMAS, ANTONIO JOSE "TONY" | MONN | ST | SO |
| 2 | 9 | 27 | SO | REICHERT, DANIEL ROBERT "DAN" | KC A | RE | SO |
| 3 | 9 | 45 | SO | WEATHERS, JOHN DAVID "DAVE" | MILN | RE | SO |
| 4 | 9 | 63 | SO | VAN POPPEL, TODD MATTHEW | CHIN | RE | SO |
| 5 | 9 | 81 | SO | STEVENS, DE WAIN LEE "LEE" | MONN | 1B | SO |
| 7 | 9 | 117 | SO | HASELMAN, WILLIAM JOSEPH "BILL | TEXA | C | SO |
| 8 | 9 | 135 | SO | BURKETT, JOHN DAVID | ATLN | RE | SO |
| 9 | 9 | 153 | SO | MAGEE, WENDELL ERROL | DETA | OF | SO |
| 10 | 9 | 171 | SO | WHITE, DEVON MARKES | LA N | OF | SO |
| ROUND | PICK | OVERALL | CURRENT | SOUTHERN TIER | TEAM | POS | ORIGINAL |
| 1 | 7 | 7 | STB | EATON, ADAM THOMAS | SD N | ST | STB |
| 2 | 7 | 25 | STB | SUZUKI, MAKOTO "MAC" | KC A | ST | STB |
| 3 | 7 | 43 | STB | HASEGAWA, SHIGETOSHI | ANAA | RE | STB |
| 4 | 7 | 61 | STB | SPEIER, JUSTIN JAMES | CLEA | RE | STB |
| 6 | 1 | 91 | STB | SPENCER, MICHAEL SHANE "SHANE" | NY A | OF | LVP |
| 6 | 7 | 97 | STB | SHELDON, SCOTT PATRICK | TEXA | SS | STB |
| 8 | 7 | 133 | STB | MC MILLON, WILLIAM EDWARD "BIL | DETA | OF | STB |
| ROUND | PICK | OVERALL | CURRENT | TEXAS | TEAM | POS | ORIGINAL |
| 1 | 4 | 4 | TT | ZITO, BARRY WILLIAM | OAKA | ST | TT |
| 2 | 4 | 22 | TT | BELL, ROBERT ALLEN "ROB" | CINN | ST | TT |
| 3 | 4 | 40 | TT | OZUNA, PABLO J | FLAN | 2B | TT |
| 4 | 4 | 58 | TT | RICHARD, CHRISTOPHER ROBERT "C | BALA | 1B | TT |
| 5 | 13 | 85 | TT | MORA, MELVIN | BALA | SS | ERE |
| 6 | 18 | 108 | TT | LAMB, MICHAEL R "MIKE" | TEXA | 3B | MM |
| 7 | 5 | 113 | TT | DE LOS SANTOS, VALERIO LORENZO | MILN | RE | CK |
| 7 | 6 | 114 | TT | PIERZYNSKI, ANTHONY JOHN "A.J. | MINA | C | DB |
| 8 | 4 | 130 | TT | HARPER, TRAVIS BOYD | TB A | ST | TT |
| 8 | 5 | 131 | TT | SANTANA, JOHAN ALEXANDER | MINA | RE | CK |
| 9 | 4 | 148 | TT | OSIK, KEITH RICHARD | PITN | C | TT |
| 10 | 4 | 166 | TT | MURRAY, CALVIN DUANE | SF N | OF | TT |
| 10 | 5 | 167 | TT | MELO, JUAN ESTEBAN | SF N | 2B | CK |
| 10 | 7 | 169 | TT | DE JEAN, MICHEL DWAIN "MIKE" | COLN | RE | STB |