7c7,9
< int main(int argc, char*argv[])
---
> void go_OTS_Uni_Malaga(char *, char *, unsigned int, unsigned int, unsigned int, unsigned int, float, float, unsigned int, unsigned int, int, int); extern "C";
> 
> void go_OTS_Uni_Malaga(char *QuerySeq, char *OutputFile, unsigned int p1, unsigned int p2, unsigned int p3, unsigned int p4, float p5, float p6, unsigned int p7, unsigned int p8, int p9, int p10)
31c33,67
<     p = CommandLine(argc,argv);
---
>     p=(struct params*)malloc(sizeof(struct params));
>     /* default values-------------------------------------*/
>     strcpy(p->fnameDB,"DB.fas");
>     strcpy(p->fnameX,QuerySeq);
>     strcpy(p->fnameOut,OutputFile);
>     strcpy(p->fnamePam,"pam250.mat");
>     strcpy(p->fname2,"freefile1");
>     strcpy(p->fname3,"freefile2");
> //  p->TipoPam = 1;
> //  p->TipoAlg = 0;
> //  p->nMaq    = MaxMAQ;
> //  p->nBEST   = NBEST;
> //  p->iGap    = IniGAP;
> //  p->eGap    = ExtGAP;
> //  p->iNum1   = 0;
> //  p->iNum2   = 0;
>     p->iNum3   = 0;
>     p->iNum4   = 0;
> //  p->fNum1   = 0.;
> //  p->fNum2   = 0.;
>     p->fNum3   = 0.;
>     p->fNum4   = 0.;
>     /*----------------------------------------------------------*/
>     p->TipoAlg= p1;
>     p->nBEST  = p2;
>     p->eGap   = p3;
>     p->iGap   = p4;
>     p->fNum1  = p5;
>     p->fNum2  = p6;
>     p->iNum2  = p7;
>     p->iNum1  = p8;
>     p->nMaq   = p9;
>     p->TipoPam = p10;
> 
>