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Protein |
Using the methodology outlined in the “Methods” section, the protein associated with the given amino acid sequence was identified as “Homo sapien Telomerase Reverse Transcriptase.” or “TERT.” The Protein-Protein Blast search had a query length of 1022 a.a.
The highest S value was 1994 with an e value of 0.0, 100% identities, 100% positives and 0% gaps.2 The accession number for TERT is AAD30037. The complete amino acid sequence can be viewed by selecting “FASTA” on the “Display” option. For convenience, the complete amino acid sequence is presented here:
1 mpraprcrav rsllrshyre vlplatfvrr lgpqgwrlvq rgdpaafral vaqclvcvpw
61 darpppaaps frqvsclkel varvlqrlce rgaknvlafg falldgargg ppeafttsvr
121 sylpntvtda lrgsgawgll lrrvgddvlv hllarcalfv lvapscayqv cgpplyqlga
181 atqarpppha sgprrrlgce rawnhsvrea gvplglpapg arrrggsasr slplpkrprr
241 gaapepertp vgqgswahpg rtrgpsdrgf cvvsparpae eatslegals gtrhshpsvg
301 rqhhagppst srpprpwdtp cppvyaetkh flyssgdkeq lrpsfllssl rpsltgarrl
361 vetiflgsrp wmpgtprrlp rlpqrywqmr plflellgnh aqcpygvllk thcplraavt
421 paagvcarek pqgsvaapee edtdprrlvq llrqhsspwq vygfvraclr rlvppglwgs
481 rhnerrflrn tkkfislgkh aklslqeltw kmsvrdcawl rrspgvgcvp aaehrlreei
541 lakflhwlms vyvvellrsf fyvtettfqk nrlffyrksv wsklqsigir qhlkrvqlre
601 lseaevrqhr earpalltsr lrfipkpdgl rpivnmdyvv gartfrrekr aerltsrvka
661 lfsvlnyera rrpgllgasv lglddihraw rtfvlrvraq dpppelyfvk vdvtgaydti
721 pqdrltevia siikpqntyc vrryavvqka ahghvrkafk shvstltdlq pymrqfvahl
781 qetsplrdav vieqssslne assglfdvfl rfmchhavri rgksyvqcqg ipqgsilstl
841 lcslcygdme nklfagirrd glllrlvddf llvtphltha ktflrtlvrg vpeygcvvnl
901 rktvvnfpve dealggtafv qmpahglfpw cgllldtrtl evqsdyssya rtsirasltf
961 nrgfkagrnm rrklfgvlrl kchslfldlq vnslqtvctn iykilllqay rfhacvlqlp
1021 fhqqvwknpt fflrvisdta slcysilkak nagmslgakg aagplpseav qwlchqafll
1081 kltrhrvtyv pllgslrtaq tqlsrklpgt tltaleaaan palpsdfkti ld
TOTAL LENGTH: 1132 amino acids
3Since no related structures were available for the human telomerase reverse transcriptase, a search was conducted on the protein page under "Structure." The closest match was: 37540-Crystal Structure of the Essential N-terminal Domain of Telomerase Reverse Transcriptase (secondary structure) from Tetrahymena thermophila
The above structure represents a “tubes” model of the N-terminal (or TEN) Domain of the TERT protein in Tetrahymena thermophila, a ciliated protozoan. Each chain (A4, B5 and C6) has 199 amino acids. The presence of amino acid residues allows for telomerase catalysis and binding of a single-stranded telomeric DNA primer which is added to the ends of chromosomes.7 Meanwhile, the C-terminus can bind to RNA, giving the TEN domain the ability to bind to both RNA and telomeric DNA.7 Telomerase also plays a key role in cellular proliferation and tumorigenesis, making its understanding extremely crucial to cancer studies, as we will soon see.8
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2007 Faiz Siddiqui