Reef and Atoll Formation
The above image from Google Earth shows the South Pacific island of Tahiti. The island has been formed from two volcanoes, and the radial lines emanating from the centre of each island show the directions of the lava flows from the central volcanoes. If the volcano emerges above the sea, it is an island - volcanoes which do not emerge above the sea are known as guyots, if they reach between 1,000-2,000m of the sea surface, and have a flat top. This flat top is a result of marine erosion.

The water around the volcano is hotter than would be expected at depths, due to the interaction with the hot erupted material. This hot water, and the volcanic island itself, is useful when helping to establish the carbonate reefs which begin to fring many volcanic islands. The reef can be seen in the image of Tahiti above, as a thin white band offshore of the island, with lagoons represented in the light blue water behind it.

The first theory as to why the reef forms around the island was proposed by Charles Darwin, during his voyage on the
HMS Beagle which also produced his landmark The Origin of the Species. As outlined by Duff (1988), the fringing reef collects when the microscopic larvae of corals, along with spores of coralline algae, are attached to the volcanic island and attach to it. If they have suitable growing conditions, such as warm water and light, they can begin to grow. Darwin observed that reefs can grow upwards at around 5mm/year, and Duff estimates that the island subsides, due to lithospheric cooling, at 0.2mm/yr. Eventually, the centre of the island (the volcano) subsides, leaving behind the reef, which becomes an atoll.

Darwin's theory explains subsidence, but does not fully describe depositional history. From investigations on the Johnston Atoll near Hawaii, drilling has revealed shallow carbonate slopes from the surface to around 122m water depth. Below this, the slope becomes near vertical, including topography that can be described as cliffs. (
Keating, 1987)

Camoin et al's analysis of Pacific Islands shows that the islands undergo periodic drowning, as well as erosion from surface processes. This is evidenced by karstification features such as sinkholes and caverns. This allows for the buildup of cliffs at depth, as the carbonate reef grows to maintain its position in the light and nutrient rich photic zone (the top 20m of water). The periodic drowning is likely to be caused by glaciations, as outlined by Daly, and described by Duff (1988).

It is worth noting that in the case of the volcanic island-atoll systems of the Pacific, the reef develops on all sides of the islands. On isolated carbonate platforms, the reef only develops on the windward side of the platform, a useful diagnostic feature for analysis of drowned platforms.

As the volcano subsides, due to erosive and tectonic processes, a shallow lagoon forms in the middle of the circular reef. At this stage of its development the island system is known as an atoll. The interior lagoon is characterised by evaporite deposits, and in some cases phosphate deposits such as those on Christmas Island (
Manten, 1972). The island of Tupai, in French Polynesia, lies northwest of Tahiti and the evolution of the island system can clearly be seen. There is no volcanic core, and the lagoon has become established in the middle of the island. The image has been taken from Google Earth:
The nutrient rich shallow waters results in the islands being host to a thriving ecosystem, particularly rich in fish. This ecosystem contributes biogenic sediments to the sedimentological makeup of the island. As such, Keating (1987) shows that an atoll's sedimentological makeup can comprise of:

51% Coralline Algae
20% Coral
2% Shell Fragments
1% Halimedia
16% 'Fine Debris'

However, changes in sea level change the areas of deposition across the island, altering its morphology. The cartoon below shows how this can occur (after
Longman, 1981)
This shows how reefs can accrete over time, and the deposition of lagoonal sediments such as evaporites and phosphates. As the sea level changes, the aerial exposure of the carbonate material can lead to diagenetic features, such as cementation. Corals are porous, and seawater is able to flow through them as tides are established around the island. This can lead to an alteration to dolomite, if the seawater is magnesium rich. Strong wave processes can erode the island, creating the fore-reef debris deposits (Roehl & Ogg, 1988)

At depth, the increased pressure makes the aragonite polymorph a stable form (
Keating, 1987) of calcium carbonate (CaCO3), which is not normally observed at the surface.

References:

Camoin, GF et al (1988) "Development and demise of mid-oceanic carbonate platforms" in "Reefs & Carbonate Platforms in the Pacific and Indian Oceans" Davies, PJ & Camoin, GF (eds), Special Publication No. 21, International Association of Sedimentologists, Blackwell, London, UK, p57-64

Duff, Donald (ed) (1988) "Coral Reefs and Atolls" in Donald, Duff (ed) "Holmes Principles of Physical Geology (4th edition)", Stanley Thornes, Cheltenham, UK. p571-579

Keating, Barbara(1987) "Structural Failure & Drowning of Johnston Atoll, Central Pacific Basin" in "Seamounts, Islands, Atolls" Keating, Barbara (ed), American Geophysical Union, Washington DC, USA, 1987, p49-58.

Longman, MW
(1981) "A process to recognizing reef facies complexes" in "European Fossil Reef Models" Toomey, DF(ed) Special Publication of the Society of Economic Palaeontology and Mineralogy, Tulsa, USA. Volume 30, pp9-40

Manten, A.A. (1972) "C. Wyville Thomson, J. Murray and the 'Challenger' expedition" in Earth Science Reviews, Elsevier Science, Amsterdam, The Netherlands. Volume 8(2) p255-266

Roehl, U & Ogg, J.G.
(1988) "Aptian-Albian Eustatic sea-levels" in "Reefs & Carbonate Platforms in the Pacific and Indian Oceans" Davies, PJ & Camoin, GF (eds), Special Publication No. 21, International Association of Sedimentologists, Blackwell, London, UK, p98-124
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