Current time is  7:26:20.51p
Enter new time: 

 SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 3.2t06 July 29, 1999
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

query2.txt: 50 nt
 >gi|557821|emb|Z38061|SC9168 S.cerevisiae chromosome IX cosmid 9168 subsequence
 vs  hs_chr01.nt library
searching hs_chr01.nt library

       opt      E()
< 20     0     0:
  22     0     0:           one = represents 1 library sequences
  24     0     0:
  26     0     0:
  28     0     0:
  30     1     0:=
  32     2     2:=*
  34     5     5:====*
  36    13    10:=========*===
  38    10    17:==========      *
  40    26    23:======================*===
  42    30    29:============================*=
  44    23    32:=======================        *
  46    27    32:===========================    *
  48    34    31:==============================*===
  50    33    28:===========================*=====
  52    22    25:======================  *
  54    12    21:============        *
  56    19    18:=================*=
  58    16    14:=============*==
  60    18    12:===========*======
  62    12     9:========*===
  64     7     7:======*
  66     7     6:=====*=
  68     5     5:====*
  70     6     4:===*==
  72     3     3:==*
  74     2     2:=*
  76     3     2:=*=
  78     1     1:*
  80     1     1:*
  82     0     1:*
  84     1     1:*
  86     0     0:
  88     1     0:=
  90     0     0:
  92     0     0:
  94     0     0:
  96     2     0:==
  98     0     0:
 100     0     0:
 102     0     0:
 104     0     0:
 106     0     0:
 108     0     0:
 110     0     0:
 112     0     0:
 114     0     0:
 116     0     0:
 118     0     0:
>120     0     0:
22067619 residues in   130 sequences
  Expectation_n fit: rho(ln(x))= 5.7541+/-0.0252; mu= 8.4513+/- 2.841;
 mean_var=34.5863+/-24.183, 0's: 0 Z-trim: 0  B-trim: 9 in 1/20
 Kolmogorov-Smirnov  statistic: 0.0481 (N=27) at  54

 Smith-Waterman (PGopt) (3.2 May, 1999) function [+5/-4 matrix (5:-4)], gap-penalty: -16/-4 reg.-scaled
 Scan time: 208.000
Enter filename for results []:  How many scores would you like to see? [20] The best  scores are:                                      s-w z-sc E(342)
gi|5867447|ref|NT_000011.1|Hs1_15| Homo sapien (79886) [r]  101   96.9    0.38
gi|6017016|ref|NT_002479.1|Hs1_2600| Homo sapi (75442) [r]  100   95.8    0.46
gi|5867542|ref|NT_000042.1|Hs1_45| Homo sapien (79886) [r]   94   85.0     1.7
gi|5867492|ref|NT_002149.1|Hs1_2268| Homo sapi (79886) [f]   92   81.6     2.7
gi|6381876|ref|NT_002662.2|Hs1_2808| Homo sapi (79886) [r]   89   76.5     5.1
gi|5867474|ref|NT_000020.1|Hs1_21| Homo sapien (50114) [f]   88   79.4     5.7
gi|5867449|ref|NT_001405.1|Hs1_1522| Homo sapi (79886) [r]   88   74.8     6.4
gi|5867482|ref|NT_002059.1|Hs1_2178| Homo sapi (79886) [f]   87   73.1     7.9
gi|6117805|ref|NT_000008.2|Hs1_12| Homo sapien (79886) [f]   87   73.1     7.9
gi|5867498|ref|NT_002169.1|Hs1_2288| Homo sapi (62274) [f]   86   73.9     9.2
gi|5867447|ref|NT_000011.1|Hs1_15| Homo sapien (79886) [f]   86   71.4     9.8
gi|5867544|ref|NT_000046.1|Hs1_49| Homo sapien (79886) [r]   86   71.4     9.8
gi|6249568|ref|NT_002680.1|Hs1_2826| Homo sapi (31655) [f]   84   77.1      12
gi|5867544|ref|NT_000046.1|Hs1_49| Homo sapien (79886) [r]   85   69.7      12
gi|5867535|ref|NT_000036.1|Hs1_39| Homo sapien (79886) [r]   85   69.7      12
gi|5867535|ref|NT_000036.1|Hs1_39| Homo sapien (79886) [f]   85   69.7      12
gi|5867518|ref|NT_002391.1|Hs1_2512| Homo sapi (79886) [r]   84   68.0      15
gi|5867550|ref|NT_000004.1|Hs1_9| Homo sapiens (79886) [r]   84   68.0      15
gi|5867485|ref|NT_002071.1|Hs1_2190| Homo sapi (79886) [f]   83   66.3      18
gi|5867549|ref|NT_000002.1|Hs1_7| Homo sapiens (79886) [f]   83   66.3      18
 More scores? [0]  Display alignments also? (y/n) [n] 

50 residues in 1 query   sequences
22067619 residues in 130 library sequences
 Scomplib [version 3.2t06 July 29, 1999]
 start: Sat Dec 11 19:26:20 1999 done: Sat Dec 11 19:29:48 1999
 Scan time: 208.000 Display time:  0.000

Function used was  Smith-Waterman 
Current time is  7:29:48.29p
Enter new time: 

