Current time is  7:21:18.97p
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 SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 3.2t06 July 29, 1999
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

query1.txt: 25 nt
 >gi|5867443|ref|NT_000007.1|Hs1_11| Homo sapiens 1p36.1-p36.3 subsequence.
 vs  hs_chr01.nt library
searching hs_chr01.nt library

       opt      E()
< 20     0     0:
  22     0     0:           one = represents 1 library sequences
  24     0     0:
  26     1     0:=
  28     0     0:
  30     0     0:
  32     1     2:=*
  34     3     5:=== *
  36    16    10:=========*======
  38    15    17:=============== *
  40    18    23:==================    *
  42    21    29:=====================       *
  44    31    31:==============================*
  46    36    32:===============================*====
  48    27    31:===========================   *
  50    29    28:===========================*=
  52    25    25:========================*
  54    24    21:====================*===
  56    16    18:================ *
  58    20    14:=============*======
  60    17    12:===========*=====
  62     8     9:========*
  64     6     7:======*
  66     6     6:=====*
  68     4     5:====*
  70     3     4:===*
  72     2     3:==*
  74     4     2:=*==
  76     1     2:=*
  78     1     1:*
  80     0     1:*
  82     2     1:*=
  84     1     1:*
  86     2     0:==
  88     0     0:
  90     0     0:
  92     1     0:=
  94     0     0:
  96     0     0:
  98     0     0:
 100     0     0:
 102     0     0:
 104     0     0:
 106     0     0:
 108     0     0:
 110     0     0:
 112     0     0:
 114     0     0:
 116     0     0:
 118     0     0:
>120     1     0:=
22067619 residues in   130 sequences
  Expectation_n fit: rho(ln(x))= 3.9204+/-0.0125; mu= 19.0236+/- 1.403;
 mean_var=21.3174+/-11.292, 0's: 0 Z-trim: 1  B-trim: 0 in 0/23
 Kolmogorov-Smirnov  statistic: 0.0334 (N=27) at  44

 Smith-Waterman (PGopt) (3.2 May, 1999) function [+5/-4 matrix (5:-4)], gap-penalty: -16/-4 reg.-scaled
 Scan time: 116.000
Enter filename for results []:  How many scores would you like to see? [20] The best  scores are:                                      s-w z-sc E(341)
gi|5867443|ref|NT_000007.1|Hs1_11| Homo sapien (79936) [f]  125  183.7 5.5e-06
gi|5867539|ref|NT_000039.1|Hs1_42| Homo sapien (79936) [f]   83   92.7    0.65
gi|6017019|ref|NT_002495.1|Hs1_2616| Homo sapi (74219) [r]   80   86.8     1.5
gi|5867537|ref|NT_000037.1|Hs1_40| Homo sapien (79936) [f]   80   86.2     1.5
gi|5923957|ref|NT_002433.1|Hs1_2554| Homo sapi (60296) [r]   77   82.1     3.3
gi|5867518|ref|NT_002391.1|Hs1_2512| Homo sapi (63679) [f]   77   81.6     3.3
gi|6056279|ref|NT_002527.1|Hs1_2637| Homo sapi (79936) [r]   76   77.5     4.5
gi|5866841|ref|NT_000003.1|Hs1_8| Homo sapiens (29039) [r]   75   84.0     5.4
gi|5867525|ref|NT_000026.1|Hs1_29| Homo sapien (51070) [f]   74   77.0     7.5
gi|6249563|ref|NT_002660.1|Hs1_2806| Homo sapi (66199) [r]   74   74.8     7.6
gi|5867488|ref|NT_002074.1|Hs1_2193| Homo sapi (67508) [f]   74   74.7     7.7
gi|5867446|ref|NT_000010.1|Hs1_14| Homo sapien (79936) [r]   74   73.2     7.8
gi|5867447|ref|NT_000011.1|Hs1_15| Homo sapien (79936) [f]   73   71.1      10
gi|5867443|ref|NT_000007.1|Hs1_11| Homo sapien (79936) [r]   73   71.1      10
gi|5867506|ref|NT_000021.1|Hs1_24| Homo sapien (38156) [r]   72   75.2      13
gi|6017014|ref|NT_002346.3|Hs1_2465| Homo sapi (79936) [r]   72   68.9      13
gi|5867544|ref|NT_000046.1|Hs1_49| Homo sapien (79936) [f]   72   68.9      13
gi|5867466|ref|NT_001818.1|Hs1_1939| Homo sapi (37585) [r]   71   73.1      17
gi|5867489|ref|NT_002075.1|Hs1_2194| Homo sapi (79936) [r]   71   66.7      18
gi|5867456|ref|NT_001605.1|Hs1_1724| Homo sapi (79936) [r]   71   66.7      18
 More scores? [0]  Display alignments also? (y/n) [n] 

25 residues in 1 query   sequences
22067619 residues in 130 library sequences
 Scomplib [version 3.2t06 July 29, 1999]
 start: Sat Dec 11 19:21:19 1999 done: Sat Dec 11 19:23:15 1999
 Scan time: 116.000 Display time:  0.000

Function used was  Smith-Waterman 
Current time is  7:23:15.74p
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