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BLASTN 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5867443|ref|NT_000007.1|Hs1_11| Homo sapiens 1p36.1-p36.3
subsequence.
         (25 letters)

Database: c:\school\cs290i\dna\blast\exe\hs_chr01.nt
           130 sequences; 22,067,619 total letters



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NT_000007.1|HS1_11| Homo sapiens 1p36.1-p36.3 sequence.            37  8e-004

>ref|NT_000007.1|HS1_11| Homo sapiens 1p36.1-p36.3 sequence.
             Length = 115602
             
 Score = 37.1 bits (125), Expect = 8e-004
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 1     tccatggatggtcataaatatgaga 25
             |||||||||||||||||||||||||
Sbjct: 11461 tccatggatggtcataaatatgaga 11485


  Database: c:\school\cs290i\dna\blast\exe\hs_chr01.nt
    Posted date:  Dec 3, 1999  7:21 AM
  Number of letters in database: 22,067,619
  Number of sequences in database:  130
  
Lambda     K      H
   0.192    0.173    0.357 

Gapped
Lambda     K      H
   0.192    0.173    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 16, Extension: 4
Number of Hits to DB: 165
Number of Sequences: 130
Number of extensions: 165
Number of successful extensions: 20
Number of sequences better than  2.0: 1
length of query: 25
length of database: 22,067,619
effective HSP length: 20
effective length of query: 5
effective length of database: 22,065,019
effective search space: 110325095
effective search space used: 110325095
T: 0
A: 0
X1: 37 (10.2 bits)
X2: 180 (49.7 bits)
S1: 81 (24.9 bits)
S2: 84 (25.7 bits)
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