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BLASTN 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|557821|emb|Z38061|SC9168 S.cerevisiae chromosome IX cosmid
9168 subsequence
         (50 letters)

Database: c:\school\cs290i\dna\blast\exe\ecoli.nt
           400 sequences; 4,662,239 total letters



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AE000325|ECAE000325 Escherichia coli , emrY, emrK, evgA, evgS...    25  0.74

>gb|AE000325|ECAE000325 Escherichia coli , emrY, emrK, evgA, evgS genes from bases 2478575 to
            2491558 (section 215 of 400) of the complete genome
            Length = 12984
            
 Score = 24.9 bits (81), Expect = 0.74
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                              
Query: 4    gacagccattaacgatag 21
            |||||||||||||||| |
Sbjct: 2069 gacagccattaacgattg 2086


  Database: c:\school\cs290i\dna\blast\exe\ecoli.nt
    Posted date:  Dec 3, 1999  7:19 AM
  Number of letters in database: 4,662,239
  Number of sequences in database:  400
  
Lambda     K      H
   0.192    0.173    0.357 

Gapped
Lambda     K      H
   0.192    0.173    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 16, Extension: 4
Number of Hits to DB: 69
Number of Sequences: 400
Number of extensions: 69
Number of successful extensions: 6
Number of sequences better than  2.0: 1
length of query: 50
length of database: 4,662,239
effective HSP length: 45
effective length of query: 5
effective length of database: 4,644,239
effective search space: 23221195
effective search space used: 23221195
T: 0
A: 0
X1: 37 (10.2 bits)
X2: 180 (49.7 bits)
S1: 81 (24.9 bits)
S2: 76 (23.5 bits)
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