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Nucleic Acid |
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序列分析/處理 |
說明 |
生物資訊資料庫 | 說明 | 引子設計 | 說明 |
| ORFinder | Open reading frame finder | European molecular biology community | PDA |
Primer design assistant | |
| Sequence Editor | DNA 序列轉換(互補, 反向) |
|
National Center for Biotechnology Information | In silico PCR | 預測設計出來的一對引子(primer),是否有PCR product |
| Transseq | DNA轉氨基酸序列 | EBI | European Bioinformatics Institute | Genefisher | Interactive PCR Primer Design |
| translator | DNA轉氨基酸序列 | ||||
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排序 |
說明 | 搜尋比對 | 說明 | 引子設計 | 說明 |
| EMBOSS-Align | Global/Local Alignment | BLAST | Basic Local Alignment Search Tool /NCBI | PerlPrimer | Primer design(download) |
| EMBOSS-Clustral W | Multiple sequence alignmnet | FASTA | Similarity Searching/EMBnet | Primer 3 | pick primers from a DNA sequence |
| EMBOSS-T-coffee | Multiple sequence alignmnet | ||||
| 核酸序列分析 | 說明 | 基因組 | 說明 | EST | 說明 |
| ORFinder | Open reading frame finder/NCBI | HGR | Human Genome resource/NCBI | UniGene |
Unique Gene Sequence Collection/NCBI |
| GENSCAN | predicting the locations and exon-intron structures of genes in genomic sequences from a variety of organisms | GDB | The GDB Human Genome Database | DDD | Digital Differential Display (DDD)/NCBI |
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RE cutting site | MGI | Mouse Genome Informatics | dbSTS | database of "Sequence Tagged Sites"/NCBI |
| GeneBuilder | Gene Structure Prediction System | ePCR | Electronic PCR /NCBI | ||
| PLACE | A Database of Plant Cis-acting Regulatory DNA Elements | ||||
| Bioedit | 序列分析工具 | ||||
| Phylogeny | 說明 | 序列登錄 | 說明 | 軟體下載 | 說明 |
| The PhylOgenetic Web Repeater (POWER) | Bankit | sequence submission/NCBI | Chromas | 定序結果分析 | |
| TreeTop | Phylogenetic Tree Prediction | EMBL via WEBIN | sequence submission/EBI | ||
| Promoter 預測 | 說明 | RNA 2級結構 | |||
| BDGP | Neural Network Promoter Prediction | Genebee | |||
| Genescan | 序列分析(含啟動子intron,exon 預測、) | ||||
|
Protein |
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| 3D 結構資料庫 | 說明 | Proteomic Tools | 說明 | 蛋白質分析 | 說明 |
| wwPDB | 蛋白質結構資料庫 | PeptideCutter | It predicts potential cleavage sites cleaved by proteases | Compute pI/Mw | a tool which allows the computation of the theoretical pI and Mw |
| RCSB-PDB | RCSB-蛋白質結構資料庫 | MatrixScience | 質譜資料分析 | ProtParam tool | 蛋白質一級結構分析 |
| MSD-EBI | Macromolecular Structure Database Group |
|
lcompositional
biases,
lclusters
and runs of charge
lamino
acid types
lrepetitive
structures…..
|
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| Rasmol | 蛋白質結構觀看軟體(freeware)下載 | ||||
| 2級結構預測 | 說明 | 3級結構預測 | 說明 | 蛋白質分析 | 說明 |
| GOR | 蛋白質二級結構預測 | Swiss-model | a fully automated protein structure homology-modeling server | EMBOSS Pepinfo |
l疏水性、親水性分析
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二級結構預測 | PredictProtein |
Ab initio method
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Scansite | 磷酸化後Mw/pI預測 |
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ProtScale
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疏水性、二級結構預測等 | ||||
| MPA |
二級結構預測(
Chou and Fasman)
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| PSIPRED | 二級結構預測等 | ||||
